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Benchmarking of virome metagenomic analysis approaches using a large, 60+ members, viral synthetic community.

Autor: Schönegger, Deborah¹, Moubset, Oumaima^2,3, Margaria, Paolo⁴, Menzel, Wulf⁴, Winter, Stephan⁴, Roumagnac, Philippe^2,3, Marais, Armelle¹, Candresse, Thierry¹ thierry.candresse@inrae.fr

Publikováno v: Journal of Virology. Nov2023, Vol. 97 Issue 11, p1-20. 20p.

Virion-associated nucleic acid-based metagenomics: a decade of advances in molecular characterization of plant viruses

Autor: Moubset, Oumaima, François, Sarah, Maclot, François, Palanga, Essowé, Julian, Charlotte, Claude, Lisa, Fernandez, Emmanuel, Rott, Philippe, Daugrois, Jean-Heinrich, Antoine-Lorquin, Aymeric, Bernardo, Pauline, Blouin, Arnaud G., Temple, Coline, Kraberger, Simona, Fontenele, Rafaela S, Harkins, Gordon William, Ma, Yuxin, Marais, Armelle, Candresse, Thierry, Ben Chehida, Sélim, Lefeuvre, Pierre, Lett, Jean-Michel, Varsani, Arvind, Massart, Sébastien, Ogliastro, Mylène, Martin, Darren Patrick, Filloux, Denis, Roumagnac, Philippe

Publikováno v: Phytopathology
Phytopathology, 2022, 112 (11), pp.2253-2272. ⟨10.1094/PHYTO-03-22-0096-RVW⟩

Over the last decade, viral metagenomic studies have resulted in the discovery of thousands of previously unknown viruses. These studies are likely to play a pivotal role in obtaining an accurate and robust understanding of how viruses affect the sta

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::72bbb92dff07adb6b971e49764fb7183
https://hal.science/hal-03705057/document

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Virion-Associated Nucleic Acid-Based Metagenomics: A Decade of Advances in Molecular Characterization of Plant Viruses.

Autor: Moubset O; CIRAD, UMR PHIM, 34090 Montpellier, France.; PHIM Plant Health Institute, Univ Montpellier, CIRAD, INRAE, Institut Agro, IRD, Montpellier, France., François S; Department of Zoology, University of Oxford, U.K., Maclot F; Plant Pathology Laboratory, Terra, Gembloux Agro-Bio Tech, Liège University, Gembloux, Belgium., Palanga E; Institut Togolais de Recherche Agronomique (ITRA-CRASS), B.P. 129, Kara, Togo., Julian C; CIRAD, UMR PHIM, 34090 Montpellier, France.; PHIM Plant Health Institute, Univ Montpellier, CIRAD, INRAE, Institut Agro, IRD, Montpellier, France., Claude L; CIRAD, UMR PHIM, 34090 Montpellier, France.; PHIM Plant Health Institute, Univ Montpellier, CIRAD, INRAE, Institut Agro, IRD, Montpellier, France., Fernandez E; CIRAD, UMR PHIM, 34090 Montpellier, France.; PHIM Plant Health Institute, Univ Montpellier, CIRAD, INRAE, Institut Agro, IRD, Montpellier, France., Rott P; CIRAD, UMR PHIM, 34090 Montpellier, France.; PHIM Plant Health Institute, Univ Montpellier, CIRAD, INRAE, Institut Agro, IRD, Montpellier, France., Daugrois JH; CIRAD, UMR PHIM, 34090 Montpellier, France.; PHIM Plant Health Institute, Univ Montpellier, CIRAD, INRAE, Institut Agro, IRD, Montpellier, France., Antoine-Lorquin A; INRA-Université de Montpellier UMR DGIMI 34095 Montpellier, France., Bernardo P; Enza Zaden, Haling 1-E, 1602 DB Enkhuizen, The Netherlands., Blouin AG; Plant Pathology Laboratory, Terra, Gembloux Agro-Bio Tech, Liège University, Gembloux, Belgium.; Plant Protection Department, Agroscope, 1260, Nyon, Switzerland., Temple C; Plant Pathology Laboratory, Terra, Gembloux Agro-Bio Tech, Liège University, Gembloux, Belgium., Kraberger S; The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ, U.S.A., Fontenele RS; The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ, U.S.A., Harkins GW; South African Medical Research Council Capacity Development Unit, South African National Bioinformatics, Institute, University of the Western Cape, South Africa., Ma Y; Univ. Bordeaux, INRAE, UMR BFP, 33140 Villenave d'Ornon, France., Marais A; Univ. Bordeaux, INRAE, UMR BFP, 33140 Villenave d'Ornon, France., Candresse T; Univ. Bordeaux, INRAE, UMR BFP, 33140 Villenave d'Ornon, France., Chéhida SB; CIRAD, UMR PVBMT, F-97410 St Pierre, La Réunion, France., Lefeuvre P; CIRAD, UMR PVBMT, F-97410 St Pierre, La Réunion, France., Lett JM; CIRAD, UMR PVBMT, F-97410 St Pierre, La Réunion, France., Varsani A; The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ, U.S.A.; Structural Biology Research Unit, Department of Integrative Biomedical Sciences, University of Cape Town, Observatory, Cape Town, South Africa., Massart S; Plant Pathology Laboratory, Terra, Gembloux Agro-Bio Tech, Liège University, Gembloux, Belgium., Ogliastro M; Department of Zoology, University of Oxford, U.K., Martin DP; Division of Computational Biology, Department of Integrative Biomedical Sciences, Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, Cape Town, South Africa., Filloux D; CIRAD, UMR PHIM, 34090 Montpellier, France.; PHIM Plant Health Institute, Univ Montpellier, CIRAD, INRAE, Institut Agro, IRD, Montpellier, France., Roumagnac P; CIRAD, UMR PHIM, 34090 Montpellier, France.; PHIM Plant Health Institute, Univ Montpellier, CIRAD, INRAE, Institut Agro, IRD, Montpellier, France.

Publikováno v: Phytopathology [Phytopathology] 2022 Nov; Vol. 112 (11), pp. 2253-2272.