Feature engineering of environmental covariates improves plant genomic-enabled prediction.

Autor: Montesinos-López OA; Facultad de Telemática, Universidad de Colima, Colima, Mexico., Crespo-Herrera L; International Maize and Wheat Improvement Center (CIMMYT), Texcoco, Edo. de Mexico, Mexico., Pierre CS; International Maize and Wheat Improvement Center (CIMMYT), Texcoco, Edo. de Mexico, Mexico., Cano-Paez B; Facultad de Ciencias, Universidad Nacioanl Autónoma de México (UNAM), México City, Mexico., Huerta-Prado GI; Independent consultant, Zinacatepec, Puebla, Mexico., Mosqueda-González BA; Centro de Investigación en Computación (CIC), Instituto Politécnico Nacional (IPN), México City, Mexico., Ramos-Pulido S; Centro Universitario de Ciencias Exactas e Ingenierías (CUCEI), Universidad de Guadalajara, Guadalajara, Jalisco, Mexico., Gerard G; International Maize and Wheat Improvement Center (CIMMYT), Texcoco, Edo. de Mexico, Mexico., Alnowibet K; Department of Statistics and Operations Research, King Saud University, Riyah, Saudi Arabia., Fritsche-Neto R; Louisiana State University, Baton Rouge, LA, United States., Montesinos-López A; Centro Universitario de Ciencias Exactas e Ingenierías (CUCEI), Universidad de Guadalajara, Guadalajara, Jalisco, Mexico., Crossa J; International Maize and Wheat Improvement Center (CIMMYT), Texcoco, Edo. de Mexico, Mexico.; Louisiana State University, Baton Rouge, LA, United States.; Distinguished Scientist Fellowship Program, King Saud University, Riyah, Saudi Arabia.; Instituto de Socieconomia, Estadistica e Informatica, Colegio de Postgraduados, Montecillos, Edo. de México, Texcoco, Mexico.

Publikováno v: Frontiers in plant science [Front Plant Sci] 2024 May 15; Vol. 15, pp. 1349569. Date of Electronic Publication: 2024 May 15 (Print Publication: 2024).

Sparse multi-trait genomic prediction under balanced incomplete block design.

Autor: Montesinos-López OA; Facultad de Telemática, Universidad de Colima, Colima, Mexico., Mosqueda-González BA; Centro de Investigación en Computación (CIC), Instituto Politécnico Nacional (IPN), Mexico City, Mexico., Salinas-Ruiz J; Colegio de Postgraduados Campus Córdoba, Amatlán de los Reyes, Mexico., Montesinos-López A; Centro Universitario de Ciencias Exactas e Ingenierías (CUCEI), Universidad de Guadalajara, Guadalajara, Mexico., Crossa J; International Maize and Wheat Improvement Center (CIMMYT), Edo. de México, Mexico.; Colegio de Postgraduados, Montecillos, Mexico.

Publikováno v: The plant genome [Plant Genome] 2023 Jun; Vol. 16 (2), pp. e20305. Date of Electronic Publication: 2023 Feb 22.

Optimizing Sparse Testing for Genomic Prediction of Plant Breeding Crops.

Autor: Montesinos-López OA; Facultad de Telemática, Universidad de Colima, Colima 28040, Mexico., Saint Pierre C; International Maize and Wheat Improvement Center (CIMMYT), Km 45, Carretera Mexico-Veracruz, El Batan, Texcoco 56237, Mexico., Gezan SA; VSN International, Hemel Hempstead HP2 4TP, UK., Bentley AR; International Maize and Wheat Improvement Center (CIMMYT), Km 45, Carretera Mexico-Veracruz, El Batan, Texcoco 56237, Mexico., Mosqueda-González BA; Centro de Investigación en Computación (CIC), Instituto Politécnico Nacional (IPN), Mexico City 07738, Mexico., Montesinos-López A; Centro Universitario de Ciencias Exactas e Ingenierías (CUCEI), Universidad de Guadalajara, Guadalajara 44430, Mexico., van Eeuwijk F; Department of Plant Science Mathematical and Statistical Methods-Biometrics, P.O. Box 16, 6700AA Wageningen, The Netherlands., Beyene Y; International Maize and Wheat Improvement Center (CIMMYT), Km 45, Carretera Mexico-Veracruz, El Batan, Texcoco 56237, Mexico., Gowda M; International Maize and Wheat Improvement Center (CIMMYT), Km 45, Carretera Mexico-Veracruz, El Batan, Texcoco 56237, Mexico., Gardner K; International Maize and Wheat Improvement Center (CIMMYT), Km 45, Carretera Mexico-Veracruz, El Batan, Texcoco 56237, Mexico., Gerard GS; International Maize and Wheat Improvement Center (CIMMYT), Km 45, Carretera Mexico-Veracruz, El Batan, Texcoco 56237, Mexico., Crespo-Herrera L; International Maize and Wheat Improvement Center (CIMMYT), Km 45, Carretera Mexico-Veracruz, El Batan, Texcoco 56237, Mexico., Crossa J; International Maize and Wheat Improvement Center (CIMMYT), Km 45, Carretera Mexico-Veracruz, El Batan, Texcoco 56237, Mexico.; Colegio de Postgraduados, Montecillos 56230, Mexico.

Publikováno v: Genes [Genes (Basel)] 2023 Apr 17; Vol. 14 (4). Date of Electronic Publication: 2023 Apr 17.

A New Deep Learning Calibration Method Enhances Genome-Based Prediction of Continuous Crop Traits.

Autor: Montesinos-López OA; Facultad de Telemática, Universidad de Colima, Colima, Mexico., Montesinos-López A; Centro Universitario de Ciencias Exactas e Ingenierías (CUCEI), Universidad de Guadalajara, Guadalajara, Mexico., Mosqueda-González BA; Centro de Investigación en Computación (CIC), Instituto Politécnico Nacional (IPN), Esq. Miguel Othón de Mendizábal, Mexico city, Mexico., Bentley AR; International Maize and Wheat Improvement Center (CIMMYT), Texcoco, Mexico., Lillemo M; Department of Plant Sciences, Norwegian University of Life Sciences, IHA/CIGENE, As, Norway., Varshney RK; Centre of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.; State Agricultural Biotechnology Centre, Centre for Crop and Food Innovation, Murdoch University, Perth, WA, Australia., Crossa J; International Maize and Wheat Improvement Center (CIMMYT), Texcoco, Mexico.; Colegio de Postgraduados, Montecillo, Mexico.

Publikováno v: Frontiers in genetics [Front Genet] 2021 Dec 17; Vol. 12, pp. 798840. Date of Electronic Publication: 2021 Dec 17 (Print Publication: 2021).