The impact of frequently neglected model violations on bacterial recombination rate estimation: a case study in Mycobacterium canettii and Mycobacterium tuberculosis.

Autor: Sabin S; Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ 85281, USA., Morales-Arce AY; Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ 85281, USA., Pfeifer SP; Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ 85281, USA., Jensen JD; Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ 85281, USA.

Publikováno v: G3 (Bethesda, Md.) [G3 (Bethesda)] 2022 May 06; Vol. 12 (5).

Ethics of DNA research on human remains: five globally applicable guidelines.

Autor: Alpaslan-Roodenberg S; Department of Genetics, Harvard Medical School, Boston, MA, USA.; Department of Evolutionary Anthropology, University of Vienna, Vienna, Austria., Anthony D; Department of Anthropology, Hartwick College, Oneonta, NY, USA.; Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA., Babiker H; Max Planck Institute for the Science of Human History, Jena, Germany., Bánffy E; Romano-Germanic Commission of the German Archaeological Institute, Frankfurt am Main, Germany., Booth T; Francis Crick Institute, London, UK., Capone P; Peabody Museum of Archaeology and Ethnology, Harvard University, Cambridge, MA, USA., Deshpande-Mukherjee A; Department of Ancient Indian History Culture and Archaeology, Deccan College Post Graduate and Research Institute, Pune, India., Eisenmann S; Max Planck Institute for the Science of Human History, Jena, Germany.; Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany., Fehren-Schmitz L; Department of Anthropology, University of California, Santa Cruz, CA, USA. lfehrens@ucsc.edu.; UCSC Genomics Institute, University of California, Santa Cruz, CA, USA. lfehrens@ucsc.edu., Frachetti M; Department of Anthropology, Washington University in St Louis, St Louis, MO, USA., Fujita R; Centro de Genética y Biología Molecular, Facultad de Medicina, Universidad de San Martín de Porres, Lima, Peru., Frieman CJ; School of Archaeology and Anthropology, The Australian National University, Canberra, Australian Capital Territory, Australia., Fu Q; Key Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Center for Excellence in Life and Paleoenvironment, Chinese Academy of Sciences, Beijing, China., Gibbon V; Division of Clinical Anatomy and Biological Anthropology, Department of Human Biology, University of Cape Town, Cape Town, South Africa., Haak W; Max Planck Institute for the Science of Human History, Jena, Germany., Hajdinjak M; Francis Crick Institute, London, UK., Hofmann KP; Romano-Germanic Commission of the German Archaeological Institute, Frankfurt am Main, Germany., Holguin B; Department of Anthropology, University of California, Santa Barbara, CA, USA., Inomata T; School of Anthropology, University of Arizona, Tucson, AZ, USA., Kanzawa-Kiriyama H; National Museum of Nature and Science, Ibaraki, Japan., Keegan W; Florida Museum of Natural History, Gainesville, FL, USA., Kelso J; Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany., Krause J; Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany., Kumaresan G; Department of Genetics, School of Biological Sciences, Madurai Kamaraj University, Madurai, India., Kusimba C; Department of Anthropology, University of South Florida, Tampa, FL, USA., Kusimba S; Department of Anthropology, University of South Florida, Tampa, FL, USA., Lalueza-Fox C; Institute of Evolutionary Biology (CSIC-UPF), Barcelona, Spain., Llamas B; Australian Centre for Ancient DNA, School of Biological Sciences and The Environment Institute, University of Adelaide, Adelaide, South Australia, Australia.; ARC Centre of Excellence for Australian Biodiversity and Heritage, University of Adelaide, Adelaide, South Australia, Australia., MacEachern S; Office of the Chancellors, Duke Kunshan University, Jiangsu, China., Mallick S; Department of Genetics, Harvard Medical School, Boston, MA, USA.; Howard Hughes Medical Institute, Boston, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Matsumura H; School of Health Science, Sapporo Medical University, Sapporo, Japan., Morales-Arce AY; Institute of Ecology and Evolution, University of Bern, Bern, Switzerland., Matuzeviciute GM; Lithuanian Institute of History and Department of Archaeology, History Faculty, Vilnius University, Vilnius, Lithuania., Mushrif-Tripathy V; Department of Ancient Indian History Culture and Archaeology, Deccan College Post Graduate and Research Institute, Pune, India., Nakatsuka N; Department of Genetics, Harvard Medical School, Boston, MA, USA., Nores R; Departamento de Antropología, Facultad de Filosofía y Humanidades, Universidad Nacional de Córdoba, Instituto de Antropología de Córdoba (IDACOR), CONICET, Córdoba, Argentina., Ogola C; Earth Sciences Department, National Museums of Kenya, Nairobi, Kenya., Okumura M; Department of Genetics and Evolutionary Biology, University of São Paulo, São Paulo, Brazil., Patterson N; Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Pinhasi R; Department of Evolutionary Anthropology, University of Vienna, Vienna, Austria.; Human Evolution and Archaeological Sciences, University of Vienna, Vienna, Austria., Prasad SPR; DBT-Centre for DNA Fingerprinting and Diagnostics, Hyderabad, India., Prendergast ME; Department of Anthropology, Rice University, Houston, TX, USA. mary@rice.edu., Punzo JL; Instituto Nacional de Antropología e Historia, Michoacán, Mexico., Reich D; Department of Genetics, Harvard Medical School, Boston, MA, USA. reich@genetics.med.harvard.edu.; Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA. reich@genetics.med.harvard.edu.; Howard Hughes Medical Institute, Boston, MA, USA. reich@genetics.med.harvard.edu.; Broad Institute of MIT and Harvard, Cambridge, MA, USA. reich@genetics.med.harvard.edu., Sawafuji R; School of Advanced Sciences, The Graduate University for Advanced Studies (SOKENDAI), Kanagawa, Japan., Sawchuk E; Department of Anthropology, University of Alberta, Edmonton, Alberta, Canada.; Department of Anthropology, Stony Brook University, Stony Brook, NY, USA., Schiffels S; Max Planck Institute for the Science of Human History, Jena, Germany.; Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany., Sedig J; Department of Genetics, Harvard Medical School, Boston, MA, USA. Jakob_Sedig@hms.harvard.edu.; Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA. Jakob_Sedig@hms.harvard.edu., Shnaider S; ArchaeoZOOlogy in Siberia and Central Asia-ZooSCAn, CNRS-IAET SB RAS International Research Laboratory, Novosibirsk, Russia., Sirak K; Department of Genetics, Harvard Medical School, Boston, MA, USA. Kendra_Sirak@hms.harvard.edu.; Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA. Kendra_Sirak@hms.harvard.edu., Skoglund P; Francis Crick Institute, London, UK., Slon V; Department of Anatomy and Anthropology and Department of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.; The Dan David Center for Human Evolution and Biohistory Research, Tel Aviv University, Tel Aviv, Israel., Snow M; Anthropology Department, University of Montana, Missoula, MO, USA., Soressi M; Faculty of Archaeology, Leiden University, Leiden, Netherlands., Spriggs M; School of Archaeology and Anthropology, The Australian National University, Canberra, Australian Capital Territory, Australia.; Vanuatu Cultural Centre, Port Vila, Vanuatu., Stockhammer PW; Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany. philipp.stockhammer@lmu.de.; Institute for Pre- and Protohistoric Archaeology and Archaeology of the Roman Provinces, Ludwig Maximilian University, Munich, Germany. philipp.stockhammer@lmu.de., Szécsényi-Nagy A; Institute of Archaeogenomics, Research Centre for the Humanities, Eötvös Loránd Research Network, Budapest, Hungary., Thangaraj K; DBT-Centre for DNA Fingerprinting and Diagnostics, Hyderabad, India.; CSIR-Centre for Cellular and Molecular Biology, Hyderabad, India., Tiesler V; School of Anthropological Sciences, Universidad Autónoma de Yucatán, Mérida, Mexico., Tobler R; Department of Anthropology, University of South Florida, Tampa, FL, USA.; Australian Centre for Ancient DNA, School of Biological Sciences and The Environment Institute, University of Adelaide, Adelaide, South Australia, Australia., Wang CC; Department of Anthropology and Ethnology, Institute of Anthropology, School of Sociology and Anthropology, State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, China.; School of Basic Medical Sciences, Zhejiang University School of Medicine, and Institute of Asian Civilizations, Zhejiang University, Hangzhou, China., Warinner C; Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.; Department of Anthropology, Harvard University, Cambridge, MA, USA., Yasawardene S; Department of Anatomy, University of Sri Jayewardenepura, Nugegoda, Sri Lanka., Zahir M; Max Planck Institute for the Science of Human History, Jena, Germany.; Department of Archaeology, Hazara University, Mansehra, Pakistan.

Publikováno v: Nature [Nature] 2021 Nov; Vol. 599 (7883), pp. 41-46. Date of Electronic Publication: 2021 Oct 20.

Evaluating the contributions of purifying selection and progeny-skew in dictating within-host Mycobacterium tuberculosis evolution.

Autor: Morales-Arce AY; Center for Evolution and Medicine, Arizona State University, Tempe, Arizona, USA., Harris RB; Center for Evolution and Medicine, Arizona State University, Tempe, Arizona, USA., Stone AC; Center for Evolution and Medicine, Arizona State University, Tempe, Arizona, USA.; School of Human Evolution and Social Change, Arizona State University, Tempe, Arizona, USA., Jensen JD; Center for Evolution and Medicine, Arizona State University, Tempe, Arizona, USA.; School of Life Sciences, Arizona State University, Tempe, Arizona, USA.

Publikováno v: Evolution; international journal of organic evolution [Evolution] 2020 May; Vol. 74 (5), pp. 992-1001. Date of Electronic Publication: 2020 Apr 13.

Ancient mitochondrial DNA and ancestry of Paquimé inhabitants, Casas Grandes (A.D. 1200-1450).

Autor: Morales-Arce AY; Department of Anthropology and Archaeology, University of Calgary, Calgary, Alberta, Canada, T2N 1N4., Snow MH; Anthropology, College of Humanities and Sciences, University of Montana, Missoula, Montana, 59812., Kelley JH; Department of Archaeology, University of Calgary (deceased), Calgary, Alberta, Canada, T2N 1N4., Anne Katzenberg M; Department of Anthropology and Archaeology, University of Calgary, Calgary, Alberta, Canada, T2N 1N4.

Publikováno v: American journal of physical anthropology [Am J Phys Anthropol] 2017 Jul; Vol. 163 (3), pp. 616-626. Date of Electronic Publication: 2017 Apr 06.