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SBML Level 3: an extensible format for the exchange and reuse of biological models.

Autor: Keating SM; Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA.; European Bioinformatics Institute, European Molecular Biology Laboratory (EMBL-EBI), Hinxton, UK.; BioQuant/COS, Heidelberg University, Heidelberg, Germany., Waltemath D; Medical Informatics, Institute for Community Health, University Medicine Greifswald, Greifswald, Germany., König M; Institute for Theoretical Biology, Humboldt-University Berlin, Berlin, Germany., Zhang F; Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA., Dräger A; Computational Systems Biology of Infection and Antimicrobial-Resistant Pathogens, Institute for Biomedical Informatics (IBMI), University of Tübingen, Tübingen, Germany.; Department of Computer Science, University of Tübingen, Tübingen, Germany.; German Center for Infection Research (DZIF), Tübingen, Germany., Chaouiya C; Aix-Marseille Université, CNRS, Centrale Marseille, Marseille, France.; Instituto Gulbenkian de Ciência, Oeiras, Portugal., Bergmann FT; BioQuant/COS, Heidelberg University, Heidelberg, Germany., Finney A; ANSYS UK Ltd, Milton Park, Oxfordshire, UK., Gillespie CS; School of Mathematics, Statistics and Physics, Newcastle University, Newcastle upon Tyne, UK., Helikar T; Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, USA., Hoops S; Biocomplexity Institute & Initiative, University of Virginia, Charlottesville, VA, USA., Malik-Sheriff RS; European Bioinformatics Institute, European Molecular Biology Laboratory (EMBL-EBI), Hinxton, UK., Moodie SL; Eight Pillars Ltd, Edinburgh, UK., Moraru II; Center for Cell Analysis and Modeling, UConn Health, Farmington, CT, USA., Myers CJ; Department of Electrical and Computer Engineering, University of Utah, Salt Lake City, UT, USA., Naldi A; Institut de Biologie de l'ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France., Olivier BG; Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA.; BioQuant/COS, Heidelberg University, Heidelberg, Germany.; SysBioLab, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands., Sahle S; BioQuant/COS, Heidelberg University, Heidelberg, Germany., Schaff JC; Applied BioMath, LLC, Concord, MA, USA., Smith LP; Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA.; Department of Bioengineering, University of Washington, Seattle, WA, USA., Swat MJ; Simcyp (a Certara company), Sheffield, South Yorkshire, UK., Thieffry D; Institut de Biologie de l'ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France., Watanabe L; Department of Electrical and Computer Engineering, University of Utah, Salt Lake City, UT, USA., Wilkinson DJ; School of Mathematics, Statistics and Physics, Newcastle University, Newcastle upon Tyne, UK.; The Alan Turing Institute, British Library, London, UK., Blinov ML; Center for Cell Analysis and Modeling, UConn Health, Farmington, CT, USA., Begley K; California Institute of Technology, Pasadena, CA, USA., Faeder JR; Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA, USA., Gómez HF; Department of Biosystems Science and Engineering, ETH Zürich, Basel, Switzerland., Hamm TM; Computational Systems Biology of Infection and Antimicrobial-Resistant Pathogens, Institute for Biomedical Informatics (IBMI), University of Tübingen, Tübingen, Germany.; Department of Computer Science, University of Tübingen, Tübingen, Germany., Inagaki Y; Management & IT Consulting Division, Mizuho Information & Research Institute, Inc., Tokyo, Japan., Liebermeister W; Université Paris-Saclay, INRAE, MaIAGE, Jouy-en-Josas, France., Lister AL; Oxford e-Research Centre (OeRC), Department of Engineering Science, University of Oxford, Oxford, UK., Lucio D; College of Sciences, NC State University, Raleigh, NC, USA., Mjolsness E; Department of Computer Science, University of California, Irvine, CA, USA., Proctor CJ; Institute of Cellular Medicine, Newcastle University, Newcastle upon Tyne, UK., Raman K; Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology (IIT) Madras, Chennai, India.; Initiative for Biological Systems Engineering (IBSE), IIT Madras, Chennai, India.; Robert Bosch Centre for Data Science and Artificial Intelligence (RBC-DSAI), IIT Madras, Chennai, India., Rodriguez N; The Babraham Institute, Cambridge, UK., Shaffer CA; Department of Computer Science, Virginia Tech, Blacksburg, VA, USA., Shapiro BE; Department of Mathematics, California State University, Northridge, CA, USA., Stelling J; Department of Biosystems Science and Engineering, SIB Swiss Institute of Bioinformatics, ETH Zürich, Basel, Switzerland., Swainston N; Institute of Integrative Biology, University of Liverpool, Liverpool, UK., Tanimura N; Science Solutions Division, Mizuho Information & Research Institute, Inc., Tokyo, Japan., Wagner J; IBM Research Australia, Melbourne, Vic., Australia., Meier-Schellersheim M; Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA., Sauro HM; Department of Bioengineering, University of Washington, Seattle, WA, USA., Palsson B; Department of Bioengineering, University of California San Diego, La Jolla, CA, USA., Bolouri H; Systems Immunology, Benaroya Research Institute at Virginia Mason, Seattle, WA, USA., Kitano H; The Systems Biology Institute, Tokyo, Japan.; Okinawa Institute of Science and Technology, Okinawa, Japan., Funahashi A; Department of Biosciences and Informatics, Keio University, Yokohama, Kanagawa, Japan., Hermjakob H; European Bioinformatics Institute, European Molecular Biology Laboratory (EMBL-EBI), Hinxton, UK., Doyle JC; Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA., Hucka M; Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA.

Publikováno v: Molecular systems biology [Mol Syst Biol] 2020 Aug; Vol. 16 (8), pp. e9110.

Model Description Language (MDL): A Standard for Modeling and Simulation.

Autor: Smith MK; Pfizer, Sandwich, UK., Moodie SL; Eight Pillars Ltd, Edinburgh, UK., Bizzotto R; CNR Institute of Neurosciences, Padova, Italy., Blaudez E; Lixoft, Orsay, France., Borella E; Università degli Studi di Pavia, Italy., Carrara L; Università degli Studi di Pavia, Italy., Chan P; Pfizer, Sandwich, UK., Chenel M; Servier, Paris, France., Comets E; INSERM, Paris, France., Gieschke R; Roche, Basel, Switzerland., Harling K; Uppsala Universitet, Sweden., Harnisch L; Pfizer, Sandwich, UK., Hartung N; Freie Univeristät Berlin, Germany., Hooker AC; Uppsala Universitet, Sweden., Karlsson MO; Uppsala Universitet, Sweden., Kaye R; Mango Solutions, Chippenham, UK., Kloft C; Freie Univeristät Berlin, Germany., Kokash N; Leiden University, Netherlands.; University College London, London, UK., Lavielle M; Inria, Saclay, Paris, France., Lestini G; INSERM, Paris, France., Magni P; Università degli Studi di Pavia, Italy., Mari A; CNR Institute of Neurosciences, Padova, Italy., Mentré F; INSERM, Paris, France., Muselle C; Mango Solutions, Chippenham, UK., Nordgren R; Uppsala Universitet, Sweden., Nyberg HB; Uppsala Universitet, Sweden.; Mango Solutions, Chippenham, UK., Parra-Guillén ZP; Freie Univeristät Berlin, Germany.; Universidad de Navarra, Spain., Pasotti L; Università degli Studi di Pavia, Italy., Rode-Kristensen N; Novo Nordisk A/S, Bagsvaerd, Denmark., Sardu ML; Merck Serono S.A., a Subsidiary of Merck KgaA, Lausanne, Switzerland., Smith GR; Scientific Computing Group, Cyprotex Discovery Limited, Macclesfield, Crewe, UK., Swat MJ; EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK., Terranova N; Merck Serono S.A., a Subsidiary of Merck KgaA, Lausanne, Switzerland., Yngman G; Uppsala Universitet, Sweden., Yvon F; EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK., Holford N; Uppsala Universitet, Sweden.; University of Auckland, New Zealand.

Publikováno v: CPT: pharmacometrics & systems pharmacology [CPT Pharmacometrics Syst Pharmacol] 2017 Oct; Vol. 6 (10), pp. 647-650. Date of Electronic Publication: 2017 Jul 12.

Dynamic computational modeling in the search for better breast cancer drug therapy.

Autor: Faratian D; Edinburgh Breakthrough Research Unit and Pathology, Cancer Research Centre, Crewe Road South, Edinburgh, EH4 2XR, UK. d.faratian@ed.ac.uk, Moodie SL, Harrison DJ, Goryanin I

Publikováno v: Pharmacogenomics [Pharmacogenomics] 2007 Dec; Vol. 8 (12), pp. 1757-61.