Loss of Stim2 in zebrafish induces glaucoma-like phenotype.

Autor: Baranykova S; Laboratory of Neurodegeneration, International Institute of Molecular and Cell Biology in Warsaw, Ks. Trojdena 4, 02-109, Warsaw, Poland., Gupta RK; Laboratory of Neurodegeneration, International Institute of Molecular and Cell Biology in Warsaw, Ks. Trojdena 4, 02-109, Warsaw, Poland.; Amity Institute of Neuropsychology & Neurosciences, Amity University, Noida, 201313, India., Kajdasz A; Institute of Bioorganic Chemistry, Polish Academy of Sciences, Zygmunta Noskowskiego 12/14, 61-704, Poznan, Poland.; Xenstats sp. z o.o., Otwarta 1, 60-008, Poznan, Poland., Wasilewska I; Mossakowski Medical Research Institute, Polish Academy of Sciences, Adolfa Pawińskiego 5, 02-106, Warsaw, Poland., Macias M; Microscopy and Cytometry Facility, International Institute of Molecular and Cell Biology, Ks. Trojdena 4, 02-109, WarsawWarsaw, Poland., Szybinska A; Microscopy and Cytometry Facility, International Institute of Molecular and Cell Biology, Ks. Trojdena 4, 02-109, WarsawWarsaw, Poland., Węgierski T; Microscopy and Cytometry Facility, International Institute of Molecular and Cell Biology, Ks. Trojdena 4, 02-109, WarsawWarsaw, Poland., Nahia KA; Laboratory of Zebrafish Developmental Genomics, International Institute of Molecular and Cell Biology in Warsaw, Ks. Trojdena 4, 02-109, Warsaw, Poland., Mondal SS; Laboratory of Zebrafish Developmental Genomics, International Institute of Molecular and Cell Biology in Warsaw, Ks. Trojdena 4, 02-109, Warsaw, Poland., Winata CL; Laboratory of Zebrafish Developmental Genomics, International Institute of Molecular and Cell Biology in Warsaw, Ks. Trojdena 4, 02-109, Warsaw, Poland., Kuźnicki J; Laboratory of Neurodegeneration, International Institute of Molecular and Cell Biology in Warsaw, Ks. Trojdena 4, 02-109, Warsaw, Poland., Majewski L; Laboratory of Neurodegeneration, International Institute of Molecular and Cell Biology in Warsaw, Ks. Trojdena 4, 02-109, Warsaw, Poland. lmajewski@iimcb.gov.pl.

Publikováno v: Scientific reports [Sci Rep] 2024 Oct 18; Vol. 14 (1), pp. 24442. Date of Electronic Publication: 2024 Oct 18.

Functional connectomics reveals general wiring rule in mouse visual cortex.

Autor: Ding Z; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.; Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, USA.; Stanford Bio-X, Stanford University, Stanford, CA, USA.; Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA., Fahey PG; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.; Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, USA.; Stanford Bio-X, Stanford University, Stanford, CA, USA.; Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA., Papadopoulos S; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.; Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, USA.; Stanford Bio-X, Stanford University, Stanford, CA, USA.; Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA., Wang EY; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA., Celii B; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.; Department of Electrical and Computer Engineering, Rice University, Houston, USA., Papadopoulos C; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA., Chang A; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA., Kunin AB; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.; Department of Mathematics, Creighton University, Omaha, USA., Tran D; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA., Fu J; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA., Ding Z; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA., Patel S; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.; Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, USA.; Stanford Bio-X, Stanford University, Stanford, CA, USA.; Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA., Ntanavara L; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.; Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, USA.; Stanford Bio-X, Stanford University, Stanford, CA, USA.; Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA., Froebe R; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.; Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, USA.; Stanford Bio-X, Stanford University, Stanford, CA, USA.; Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA., Ponder K; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA., Muhammad T; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA., Alexander Bae J; Princeton Neuroscience Institute, Princeton University, Princeton, USA.; Electrical and Computer Engineering Department, Princeton University, Princeton, USA., Bodor AL; Allen Institute for Brain Science, Seattle, USA., Brittain D; Allen Institute for Brain Science, Seattle, USA., Buchanan J; Allen Institute for Brain Science, Seattle, USA., Bumbarger DJ; Allen Institute for Brain Science, Seattle, USA., Castro MA; Princeton Neuroscience Institute, Princeton University, Princeton, USA., Cobos E; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA., Dorkenwald S; Princeton Neuroscience Institute, Princeton University, Princeton, USA.; Computer Science Department, Princeton University, Princeton, USA., Elabbady L; Allen Institute for Brain Science, Seattle, USA., Halageri A; Princeton Neuroscience Institute, Princeton University, Princeton, USA., Jia Z; Princeton Neuroscience Institute, Princeton University, Princeton, USA.; Computer Science Department, Princeton University, Princeton, USA., Jordan C; Princeton Neuroscience Institute, Princeton University, Princeton, USA., Kapner D; Allen Institute for Brain Science, Seattle, USA., Kemnitz N; Princeton Neuroscience Institute, Princeton University, Princeton, USA., Kinn S; Allen Institute for Brain Science, Seattle, USA., Lee K; Princeton Neuroscience Institute, Princeton University, Princeton, USA.; Brain & Cognitive Sciences Department, Massachusetts Institute of Technology, Cambridge, USA., Li K; Computer Science Department, Princeton University, Princeton, USA., Lu R; Princeton Neuroscience Institute, Princeton University, Princeton, USA., Macrina T; Princeton Neuroscience Institute, Princeton University, Princeton, USA.; Computer Science Department, Princeton University, Princeton, USA., Mahalingam G; Allen Institute for Brain Science, Seattle, USA., Mitchell E; Princeton Neuroscience Institute, Princeton University, Princeton, USA., Mondal SS; Princeton Neuroscience Institute, Princeton University, Princeton, USA.; Electrical and Computer Engineering Department, Princeton University, Princeton, USA., Mu S; Princeton Neuroscience Institute, Princeton University, Princeton, USA., Nehoran B; Princeton Neuroscience Institute, Princeton University, Princeton, USA.; Computer Science Department, Princeton University, Princeton, USA., Popovych S; Princeton Neuroscience Institute, Princeton University, Princeton, USA.; Computer Science Department, Princeton University, Princeton, USA., Schneider-Mizell CM; Allen Institute for Brain Science, Seattle, USA., Silversmith W; Princeton Neuroscience Institute, Princeton University, Princeton, USA., Takeno M; Allen Institute for Brain Science, Seattle, USA., Torres R; Allen Institute for Brain Science, Seattle, USA., Turner NL; Princeton Neuroscience Institute, Princeton University, Princeton, USA.; Computer Science Department, Princeton University, Princeton, USA., Wong W; Princeton Neuroscience Institute, Princeton University, Princeton, USA., Wu J; Princeton Neuroscience Institute, Princeton University, Princeton, USA., Yin W; Allen Institute for Brain Science, Seattle, USA., Yu SC; Princeton Neuroscience Institute, Princeton University, Princeton, USA., Yatsenko D; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.; DataJoint Inc., Houston, TX, USA., Froudarakis E; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.; Department of Basic Sciences, Faculty of Medicine, University of Crete, Heraklion, Greece.; Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology Hellas, Heraklion, Greece., Sinz F; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.; Institute for Bioinformatics and Medical Informatics, University Tübingen, Tübingen, Germany.; Institute for Computer Science and Campus Institute Data Science, University Göttingen, Göttingen, Germany., Josić K; Departments of Mathematics, Biology and Biochemistry, University of Houston, Houston, USA., Rosenbaum R; Departments of Applied and Computational Mathematics and Statistics and Biological Sciences, University of Notre Dame, Notre Dame, USA., Sebastian Seung H; Princeton Neuroscience Institute, Princeton University, Princeton, USA., Collman F; Allen Institute for Brain Science, Seattle, USA., da Costa NM; Allen Institute for Brain Science, Seattle, USA., Clay Reid R; Allen Institute for Brain Science, Seattle, USA., Walker EY; Department of Neurobiology & Biophysics, University of Washington, Seattle, USA.; Computational Neuroscience Center, University of Washington, Seattle, USA., Pitkow X; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.; Department of Electrical and Computer Engineering, Rice University, Houston, USA.; Department of Computer Science, Rice University, Houston, TX, USA.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, PA, USA.; Department of Machine Learning, Carnegie Mellon University, Pittsburgh, PA, USA., Reimer J; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA., Tolias AS; Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.; Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, USA.; Stanford Bio-X, Stanford University, Stanford, CA, USA.; Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA.; Department of Electrical and Computer Engineering, Rice University, Houston, USA.; Department of Electrical Engineering, Stanford University, Stanford, CA, USA.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2024 Oct 14. Date of Electronic Publication: 2024 Oct 14.

Determinantal point process attention over grid cell code supports out of distribution generalization.

Autor: Mondal SS; Department of Electrical and Computer Engineering, Princeton University, Princeton, United States., Frankland S; Princeton Neuroscience Institute, Princeton University, Princeton, United States., Webb TW; Department of Psychology, University of California, Los Angeles, Los Angeles, United States., Cohen JD; Princeton Neuroscience Institute, Princeton University, Princeton, United States.

Publikováno v: ELife [Elife] 2024 Aug 01; Vol. 12. Date of Electronic Publication: 2024 Aug 01.

Lack of Stim2 Affects Vision-Dependent Behavior and Sensitivity to Hypoxia.

Autor: Wasilewska I; International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.; Mossakowski Medical Research Institute, Polish Academy of Sciences, Warsaw, Poland., Majewski Ł; International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Adamek-Urbańska D; Department of Ichthyology and Biotechnology in Aquaculture, Institute of Animal Sciences, Warsaw University of Life Sciences, Warsaw, Poland., Mondal SS; International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Baranykova S; International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Gupta RK; International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Bielecki D; International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Winata CL; International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Kuznicki J; International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.

Publikováno v: Zebrafish [Zebrafish] 2023 Aug; Vol. 20 (4), pp. 146-159.

Integrating EM and Patch-seq data: Synaptic connectivity and target specificity of predicted Sst transcriptomic types.

Autor: Gamlin CR, Schneider-Mizell CM, Mallory M, Elabbady L, Gouwens N, Williams G, Mukora A, Dalley R, Bodor A, Brittain D, Buchanan J, Bumbarger D, Kapner D, Kinn S, Mahalingam G, Seshamani S, Takeno M, Torres R, Yin W, Nicovich PR, Bae JA, Castro MA, Dorkenwald S, Halageri A, Jia Z, Jordan C, Kemnitz N, Lee K, Li K, Lu R, Macrina T, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Silversmith W, Turner NL, Wong W, Wu J, Yu S, Berg J, Jarsky T, Lee B, Seung HS, Zeng H, Reid RC, Collman F, da Costa NM, Sorensen SA

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2023 Mar 24. Date of Electronic Publication: 2023 Mar 24.