Zobrazeno 1 - 10
of 18
pro vyhledávání: '"Momoe Kato"'
Autor:
Sudha Sunil Rajderkar, Kitt Paraiso, Maria Luisa Amaral, Michael Kosicki, Laura E. Cook, Fabrice Darbellay, Cailyn H. Spurrell, Marco Osterwalder, Yiwen Zhu, Han Wu, Sarah Yasmeen Afzal, Matthew J. Blow, Guy Kelman, Iros Barozzi, Yoko Fukuda-Yuzawa, Jennifer A. Akiyama, Veena Afzal, Stella Tran, Ingrid Plajzer-Frick, Catherine S. Novak, Momoe Kato, Riana D. Hunter, Kianna von Maydell, Allen Wang, Lin Lin, Sebastian Preissl, Steven Lisgo, Bing Ren, Diane E. Dickel, Len A. Pennacchio, Axel Visel
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-18 (2024)
Abstract The genetic basis of human facial variation and craniofacial birth defects remains poorly understood. Distant-acting transcriptional enhancers control the fine-tuned spatiotemporal expression of genes during critical stages of craniofacial d
Externí odkaz:
https://doaj.org/article/ad066eccb027472d812a541544ff79a2
Autor:
Diane E. Dickel, Iros Barozzi, Yiwen Zhu, Yoko Fukuda-Yuzawa, Marco Osterwalder, Brandon J. Mannion, Dalit May, Cailyn H. Spurrell, Ingrid Plajzer-Frick, Catherine S. Pickle, Elizabeth Lee, Tyler H. Garvin, Momoe Kato, Jennifer A. Akiyama, Veena Afzal, Ah Young Lee, David U. Gorkin, Bing Ren, Edward M. Rubin, Axel Visel, Len A. Pennacchio
Publikováno v:
Nature Communications, Vol 7, Iss 1, Pp 1-13 (2016)
Identification of non-coding variants has outstripped our ability to annotate and interpret them. Dickel et al. present a compendium of over 80,000 putative human heart enhancers and demonstrate that two conserved enhancers are required for proper ca
Externí odkaz:
https://doaj.org/article/b001d43a207246388e738ba39f9b2876
Limb-Enhancer Genie: An accessible resource of accurate enhancer predictions in the developing limb.
Autor:
Remo Monti, Iros Barozzi, Marco Osterwalder, Elizabeth Lee, Momoe Kato, Tyler H Garvin, Ingrid Plajzer-Frick, Catherine S Pickle, Jennifer A Akiyama, Veena Afzal, Niko Beerenwinkel, Diane E Dickel, Axel Visel, Len A Pennacchio
Publikováno v:
PLoS Computational Biology, Vol 13, Iss 8, p e1005720 (2017)
Epigenomic mapping of enhancer-associated chromatin modifications facilitates the genome-wide discovery of tissue-specific enhancers in vivo. However, reliance on single chromatin marks leads to high rates of false-positive predictions. More sophisti
Externí odkaz:
https://doaj.org/article/2df35e120b6d46c4941c2992b6a30bfe
Autor:
Cailyn H. Spurrell, Iros Barozzi, Michael Kosicki, Brandon J. Mannion, Matthew J. Blow, Yoko Fukuda-Yuzawa, Neil Slaven, Sarah Y. Afzal, Jennifer A. Akiyama, Veena Afzal, Stella Tran, Ingrid Plajzer-Frick, Catherine S. Novak, Momoe Kato, Elizabeth A. Lee, Tyler H. Garvin, Quan T. Pham, Anne N. Kronshage, Steven Lisgo, James Bristow, Thomas P. Cappola, Michael P. Morley, Kenneth B. Margulies, Len A. Pennacchio, Diane E. Dickel, Axel Visel
Publikováno v:
Cell reports, vol 40, iss 12
Heart disease is associated with re-expression of key transcription factors normally active only during prenatal development of the heart. However, the impact of this reactivation on the regulatory landscape in heart disease is unclear. Here, we use
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::77e08487b6c3944840b9b551f82b259d
https://escholarship.org/uc/item/2zk8j1fx
https://escholarship.org/uc/item/2zk8j1fx
Autor:
Jennifer A. Akiyama, Stella Tran, Quan T. Pham, Anne N. Harrington, Brandon J. Mannion, John L.R. Rubenstein, Momoe Kato, Catherine S. Novak, Eman Meky, Diane E. Dickel, Evgeny Z. Kvon, Ingrid Plajzer-Frick, Janeth Godoy, Veena Afzal, Len A. Pennacchio, Valentina Snetkova, Marie Shi, Athena R. Ypsilanti, Axel Visel, Yiwen Zhu, Riana D. Hunter
Publikováno v:
Nature Genetics. 53:521-528
Ultraconserved enhancer sequences show perfect conservation between human and rodent genomes, suggesting that their functions are highly sensitive to mutation. However, current models of enhancer function do not sufficiently explain this extreme evol
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::83544b7dd17fda5471194a1954221094
https://doi.org/10.1038/s41588-021-00812-3
https://doi.org/10.1038/s41588-021-00812-3
Autor:
Brandon J. Mannion, Marco Osterwalder, Stella Tran, Ingrid Plajzer-Frick, Catherine S. Novak, Veena Afzal, Jennifer A. Akiyama, Sarah Barton, Erik Beckman, Tyler H. Garvin, Patrick Godfrey, Janeth Godoy, Riana D. Hunter, Momoe Kato, Michal Kosicki, Anne N. Kronshage, Elizabeth A. Lee, Eman M. Meky, Quan T. Pham, Kianna von Maydell, Yiwen Zhu, Javier Lopez-Rios, Diane E. Dickel, Axel Visel, Len A. Pennacchio
Transcriptional enhancers are a predominant class of noncoding regulatory elements that activate cell type-specific gene expression. Tissue-specific enhancer-associated chromatin signatures have proven useful to identify candidate enhancer elements a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::9f7392f98de36be6db7108e4bf463c63
https://doi.org/10.1101/2022.05.29.493901
https://doi.org/10.1101/2022.05.29.493901
Autor:
Anne N. Harrington, Emrah Gumusgoz, Kevin Y. Yip, Anurag Sethi, Axel Visel, Elizabeth Lee, Catherine S. Novak, Mengting Gu, Richard E. Sutton, Ingrid Plajzer-Frick, Iros Barozzi, Momoe Kato, Tyler H. Garvin, Len A. Pennacchio, Quan Pham, Koon-Kiu Yan, Brandon J. Mannion, Yoko Fukuda-Yuzawa, Landon L Chan, Veena Afzal, Diane E. Dickel, Mark Gerstein, Jennifer A. Akiyama, Chengfei Yan, Joel Rozowsky
Publikováno v:
Nature methods, vol 17, iss 8
Nature methods
Nature methods
Enhancers are important non-coding elements, but they have traditionally been hard to characterize experimentally. The development of massively parallel assays allows the characterization of large numbers of enhancers for the first time. Here, we dev
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::53516be68668786171cea79b7f4b526f
https://escholarship.org/uc/item/9q55f3n7
https://escholarship.org/uc/item/9q55f3n7
Autor:
Axel Visel, Catherine S. Novak, Tyler H. Garvin, Hongbo Yang, Anne N. Harrington, Diane E. Dickel, Yin Shen, Kyle J. Gaulton, J. Michael Cherry, Bin Li, Quan T. Pham, Yunjiang Qiu, Mengchi Wang, Jean M. Davidson, Bo Ding, Elizabeth Lee, Ingrid Plajzer-Frick, Sora Chee, Sebastian Preissl, Jee Yun Han, Diane Trout, Henry Amrhein, Yupeng He, Jennifer A. Akiyama, Momoe Kato, Joseph R. Ecker, Veena Afzal, J. Seth Strattan, Yuan Zhao, Bo Zhang, Wei Wang, Len A. Pennacchio, David U. Gorkin, Brian A. Williams, Iros Barozzi, Ah Young Lee, Hui Huang, Yoko Fukuda-Yuzawa, Yanxiao Zhang, Brandon J. Mannion, Bing Ren, Andre Wildberg, Joshua Chiou
Publikováno v:
Nature, vol 583, iss 7818
Nature
Nature
The Encyclopedia of DNA Elements (ENCODE) project has established a genomic resource for mammalian development, profiling a diverse panel of mouse tissues at 8 developmental stages from 10.5 days after conception until birth, including transcriptomes
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6f247784ec64efc5f84e457834a66464
https://escholarship.org/uc/item/5ch369qm
https://escholarship.org/uc/item/5ch369qm
Autor:
Elizabeth Lee, Momoe Kato, Quan Pham, Veena Afzal, James Bristow, Cailyn H. Spurrell, Iros Barozzi, Stella Tran, Matthew J. Blow, Steven Lisgo, Michael Morley, Kenneth B. Margulies, Diane E. Dickel, Axel Visel, Len A. Pennacchio, Catherine S. Novak, Tyler H. Garvin, Yoko Fukuda-Yuzawa, Thomas P. Cappola, Sarah Y. Afzal, Anne N. Harrington, Jennifer A. Akiyama, Ingrid Plajzer-Frick, Brandon J. Mannion
Author(s): Spurrell, Cailyn; Barozzi, Iros; Mannion, Brandon; Blow, Matthew; Fukuda-Yuzawa, Yoko; Afzal, Sarah; Akiyama, Jennifer; Afzal, Veena; Tran, Stella; Plajzer-Frick, Ingrid; Novak, Catherine; Kato, Momoe; Lee, Elizabeth; Garvin, Tyler; Pham,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1669c3f0dad17f9dc73f88a70617c3c3
https://escholarship.org/uc/item/1b18p0b8
https://escholarship.org/uc/item/1b18p0b8
Autor:
Catherine S. Novak, Quan T. Pham, Bo Ding, Diane Trout, Ingrid Plajzer-Frick, Yuan Zhao, J. Seth Strattan, Elizabeth Lee, Jee Yun Han, Bin Li, Jennifer A. Akiyama, Veena Afzal, Hongbo Yang, Ah Young Lee, Joseph R. Ecker, Sebastian Preissl, Kyle J. Gaulton, Anne N. Harrington, Momoe Kato, Andre Wildberg, Yupeng He, Diane E. Dickel, Tyler H. Garvin, Jean M. Davidson, Joshua Chiou, Bo Zhang, Len A. Pennacchio, Hui Huang, Yoko Fukuda-Yuzawa, Iros Barozzi, Brian A. Williams, Yanxiao Zhang, Yunjiang Qiu, Sora Chee, Axel Visel, Henry Amrhein, Bing Ren, J. Michael Cherry, Wei Wang, Mengchi Wang, David U. Gorkin, Yin Shen, Brandon J. Mannion
Publikováno v:
Nature
Nature, vol 589, iss 7842
Nature, vol 586, iss 7831
Nature, vol 589, iss 7842
Nature, vol 586, iss 7831
The Encyclopedia of DNA Elements (ENCODE) project has established a genomic resource for mammalian development, profiling a diverse panel of mouse tissues at 8 developmental stages from 10.5 days after conception until birth, including transcriptomes
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f6a6bd29ecbb2a0c7e931f652be70746
https://doi.org/10.1038/s41586-020-03089-4
https://doi.org/10.1038/s41586-020-03089-4