Var∣Decrypt: a novel and user-friendly tool to explore and prioritize variants in whole-exome sequencing data

Autor: Mohammad Salma, Elina Alaterre, Jérôme Moreaux, Eric Soler

Publikováno v: Epigenetics & Chromatin, Vol 16, Iss 1, Pp 1-13 (2023)

Abstract Background High-throughput sequencing (HTS) offers unprecedented opportunities for the discovery of causative gene variants in multiple human disorders including cancers, and has revolutionized clinical diagnostics. However, despite more tha

Externí odkaz: https://doaj.org/article/3a0984a3dd6346e99561c62ea01b1772

Characterization of the Viable but Nonculturable (VBNC) State in Saccharomyces cerevisiae.

Autor: Mohammad Salma, Sandrine Rousseaux, Anabelle Sequeira-Le Grand, Benoit Divol, Hervé Alexandre

Publikováno v: PLoS ONE, Vol 8, Iss 10, p e77600 (2013)

The Viable But Non Culturable (VBNC) state has been thoroughly studied in bacteria. In contrast, it has received much less attention in other microorganisms. However, it has been suggested that various yeast species occurring in wine may enter in VBN

Externí odkaz: https://doaj.org/article/09e70db7e28a4583ae35f7b62ab679f6

High-throughput methods for the analysis of transcription factors and chromatin modifications: Low input, single cell and spatial genomic technologies

Autor: Mohammad Salma, Charlotte Andrieu-Soler, Virginie Deleuze, Eric Soler

Publikováno v: Blood Cells, Molecules, and Diseases. 101:102745

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::2cc90c6fc681a9dffebc939c470bef03
https://doi.org/10.1016/j.bcmd.2023.102745

ONTdeCIPHER: an amplicon-based nanopore sequencing pipeline for tracking pathogen variants

Autor: Emira Cherif, Fatou Seck Thiam, Mohammad Salma, Georgina Rivera-Ingraham, Fabienne Justy, Theo Deremarque, Damien Breugnot, Jean-Claude Doudou, Rodolphe Elie Gozlan, Marine Combe

Publikováno v: Bioinformatics. 38:2033-2035

Motivation Amplicon-based nanopore sequencing is increasingly used for molecular surveillance during epidemics (e.g. ZIKA, EBOLA) or pandemics (e.g. SARS-CoV-2). However, there is still a lack of versatile and easy-to-use tools that allow users with

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7846ccc2bc098eb72669279b37a6c85d
https://doi.org/10.1093/bioinformatics/btac043

p53 activation during ribosome biogenesis regulates normal erythroid differentiation

Autor: François Morlé, Stéphane Giraudier, Eric Soler, Naomi Taylor, Charlotte Andrieu-Soler, Olivier Hermine, Patrick Mayeux, Célia Floquet, Rose Ann Padua, Frédérique Verdier, Sarah Ducamp, Michaela Fontenay, Mohammad Salma, Elisabeth M. Cramer-Borde, Ismael Boussaid, Anna Raimbault, Isabelle Hatin, Diane d'Allard, Amandine Houvert, Narla Mohandas, Boris Guyot, Emilie-Fleur Gautier, Sandrina Kinet, Marjorie Leduc, Pierre-Emmanuel Gleizes, Jean-Jacques Diaz, Salomé Le Goff, François Guillonneau, Nathalie Montel-Lehry

Publikováno v: Blood
Blood, American Society of Hematology, 2021, 137 (1), pp.89-102. ⟨10.1182/blood.2019003439⟩
Blood, 2020, ⟨10.1182/blood.2019003439⟩
Blood, American Society of Hematology, 2020, ⟨10.1182/blood.2019003439⟩
Blood, American Society of Hematology, 2020, 137 (1), pp.89-102. ⟨10.1182/blood.2019003439⟩
Blood, 2021, 137 (1), pp.89-102. ⟨10.1182/blood.2019003439⟩

The role of ribosome biogenesis in erythroid development is supported by the recognition of erythroid defects in ribosomopathies in both Diamond-Blackfan anemia and 5q− syndrome. Whether ribosome biogenesis exerts a regulatory function on normal er

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c6c14ec0b5187882ecdef968124a4606
https://doi.org/10.1182/blood.2019003439