FAIR Data Pipeline: provenance-driven data management for traceable scientific workflows

Autor: Mitchell, Sonia Natalie, Lahiff, Andrew, Cummings, Nathan, Hollocombe, Jonathan, Boskamp, Bram, Field, Ryan, Reddyhoff, Dennis, Zarebski, Kristian, Wilson, Antony, Viola, Bruno, Burke, Martin, Archibald, Blair, Bessell, Paul, Blackwell, Richard, Boden, Lisa A, Brett, Alys, Brett, Sam, Dundas, Ruth, Enright, Jessica, Gonzalez-Beltran, Alejandra N., Harris, Claire, Hinder, Ian, Hughes, Christopher David, Knight, Martin, Mano, Vino, McMonagle, Ciaran, Mellor, Dominic, Mohr, Sibylle, Marion, Glenn, Matthews, Louise, McKendrick, Iain J., Pooley, Christopher Mark, Porphyre, Thibaud, Reeves, Aaron, Townsend, Edward, Turner, Robert, Walton, Jeremy, Reeve, Richard

Modern epidemiological analyses to understand and combat the spread of disease depend critically on access to, and use of, data. Rapidly evolving data, such as data streams changing during a disease outbreak, are particularly challenging. Data manage

Externí odkaz: http://arxiv.org/abs/2110.07117

How to partition diversity

Autor: Reeve, Richard, Leinster, Tom, Cobbold, Christina A., Thompson, Jill, Brummitt, Neil, Mitchell, Sonia N., Matthews, Louise

Diversity measurement underpins the study of biological systems, but measures used vary across disciplines. Despite their common use and broad utility, no unified framework has emerged for measuring, comparing and partitioning diversity. The introduc

Externí odkaz: http://arxiv.org/abs/1404.6520

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A large-scale genomic snapshot of Klebsiella spp. isolates in Northern Italy reveals limited transmission between clinical and non-clinical settings

Autor: Thorpe, Harry Arthur Frank Wright, Booton, Ross, Kallonen, Teemu, Gibbon, Marjorie J., Couto, Natacha, Passet, Virginie, López-Fernández, Sebastián, Rodrigues, Carla, Matthews, Louise, Mitchell, Sonia, Reeve, Richard, David, Sophia, Merla, Cristina, Corbella, Marta, Ferrari, Carolina, Comandatore, Francesco, Marone, Piero, Brisse, Sylvain, Sassera, Davide, Corander, Jukka, Feil, Edward J.

Publikováno v: Thorpe, Harry Arthur Frank Wright Booton, Ross Kallonen, Teemu Gibbon, Marjorie J. Couto, Natacha Passet, Virginie López-Fernández, Sebastián Rodrigues, Carla Matthews, Louise Mitchell, Sonia Reeve, Richard David, Sophia Merla, Cristina Corbella, Marta Ferrari, Carolina Comandatore, Francesco Marone, Piero Brisse, Sylvain Sassera, Davide Corander, Jukka Feil, Edward J. . A large-scale genomic snapshot of Klebsiella spp. isolates in Northern Italy reveals limited transmission between clinical and non-clinical settings. Nature Microbiology. 2022, 7, 2054-2067
Nature Microbiology

Externí odkaz: http://hdl.handle.net/10852/99422

Pitfalls and virtues of population genetic summary statistics: detecting selective sweeps in recent divergences

Autor: Schneider, Kevin, White, Tom J., Mitchell, Sonia, Adams, Colin E., Reeve, Richard, Elmer, Kathryn R.

During evolution, genomes are shaped by a plethora of forces that can leave characteristic signatures. A common goal when studying diverging populations is to detect the signatures of selective sweeps, which can be rather difficult in complex demogra

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=core_ac_uk__::760ed853a3e1fe3ad400daf1a26652ba
https://eprints.gla.ac.uk/226213/2/226213.pdf