Representative Sequencing: Unbiased Sampling of Solid Tumor Tissue

Autor: Kevin Litchfield, Stacey Stanislaw, Lavinia Spain, Lisa L. Gallegos, Andrew Rowan, Desiree Schnidrig, Heidi Rosenbaum, Alexandre Harle, Lewis Au, Samantha M. Hill, Zayd Tippu, Jennifer Thomas, Lisa Thompson, Hang Xu, Stuart Horswell, Aoune Barhoumi, Carol Jones, Katherine F. Leith, Daniel L. Burgess, Thomas B.K. Watkins, Emilia Lim, Nicolai J. Birkbak, Philippe Lamy, Iver Nordentoft, Lars Dyrskjøt, Lisa Pickering, Stephen Hazell, Mariam Jamal-Hanjani, James Larkin, Charles Swanton, Nelson R. Alexander, Samra Turajlic, Chris Abbosh, Kai-Keen Shiu, John Bridgewater, Daniel Hochhauser, Martin Forster, Siow-Ming Lee, Tanya Ahmad, Dionysis Papadatos-Pastos, Sam Janes, Peter Van Loo, Katey Enfield, Nicholas McGranahan, Ariana Huebner, Sergio Quezada, Stephan Beck, Peter Parker, Henning Walczak, Tariq Enver, Rob Hynds, Mary Falzon, Ian Proctor, Ron Sinclair, Chi-wah Lok, Zoe Rhodes, David Moore, Teresa Marafioti, Elaine Borg, Miriam Mitchison, Reena Khiroya, Giorgia Trevisan, Peter Ellery, Mark Linch, Sebastian Brandner, Crispin Hiley, Selvaraju Veeriah, Maryam Razaq, Heather Shaw, Gert Attard, Mita Afroza Akther, Cristina Naceur-Lombardelli, Lizi Manzano, Maise Al-Bakir, Simranpreet Summan, Nnenna Kanu, Sophie Ward, Uzma Asghar, Faye Gishen, Adrian Tookman, Paddy Stone, Caroline Stirling, Andrew Furness, Kim Edmonds, Nikki Hunter, Sarah Sarker, Sarah Vaughan, Mary Mangwende, Karla Pearce, Scott Shepherd, Haixi Yan, Ben Shum, Eleanor Carlyle, Steve Hazell, Annika Fendler, Fiona Byrne, Nadia Yousaf, Sanjay Popat, Olivia Curtis, Gordon Stamp, Antonia Toncheva, Emma Nye, Aida Murra, Justine Korteweg, Nahid Sheikh, Debra Josephs, Ashish Chandra, James Spicer, Ula Mahadeva, Anna Green, Ruby Stewart, Lara-Rose Iredale, Tina Mackay, Ben Deakin, Debra Enting, Sarah Rudman, Sharmistha Ghosh, Lena Karapagniotou, Elias Pintus, Andrew Tutt, Sarah Howlett, Vasiliki Michalarea, James Brenton, Carlos Caldas, Rebecca Fitzgerald, Merche Jimenez-Linan, Elena Provenzano, Alison Cluroe, Grant Stewart, Colin Watts, Richard Gilbertson, Ultan McDermott, Simon Tavare, Emma Beddowes, Patricia Roxburgh, Andrew Biankin, Anthony Chalmers, Sioban Fraser, Karin Oien, Andrew Kidd, Kevin Blyth, Matt Krebs, Fiona Blackhall, Yvonne Summers, Caroline Dive, Richard Marais, Fabio Gomes, Mat Carter, Jo Dransfield, John Le Quesne, Dean Fennell, Jacqui Shaw, Babu Naidu, Shobhit Baijal, Bruce Tanchel, Gerald Langman, Andrew Robinson, Martin Collard, Peter Cockcroft, Charlotte Ferris, Hollie Bancroft, Amy Kerr, Gary Middleton, Joanne Webb, Salma Kadiri, Peter Colloby, Bernard Olisemeke, Rodelaine Wilson, Ian Tomlinson, Sanjay Jogai, Christian Ottensmeier, David Harrison, Massimo Loda, Adrienne Flanagan, Mairead McKenzie, Allan Hackshaw, Jonathan Ledermann, Abby Sharp, Laura Farrelly, Hayley Bridger

Publikováno v: Cell Reports, Vol 31, Iss 5, Pp - (2020)

Summary: Although thousands of solid tumors have been sequenced to date, a fundamental under-sampling bias is inherent in current methodologies. This is caused by a tissue sample input of fixed dimensions (e.g., 6 mm biopsy), which becomes grossly un

Externí odkaz: https://doaj.org/article/5542750c54464de39c1b869ec12a56ce

Representative Sequencing: Unbiased Sampling of Solid Tumor Tissue

Autor: Richard Marais, Andrew Furness, Thomas B.K. Watkins, Maise Al-Bakir, Dionysis Papadatos-Pastos, Maryam Razaq, Mairead McKenzie, Lisa Pickering, Peter Ellery, Jonathan Ledermann, Andrew V. Biankin, Richard J. Gilbertson, Peter Cockcroft, Mary Mangwende, Sophie Ward, Mary Falzon, Cristina Naceur-Lombardelli, Carlos Caldas, Karla Pearce, Jacqui Shaw, Salma Kadiri, Lars Dyrskjøt, Mark Linch, Daniel Burgess, Nelson Alexander, Christian H. Ottensmeier, Kevin G. Blyth, Lisa L. Gallegos, Rodelaine Wilson, Hayley Bridger, Fiona H Blackhall, Peter J. Parker, Charles Swanton, Allan Hackshaw, Gert Attard, Gordon Stamp, Dean A. Fennell, Debra H. Josephs, Andrew P. Robinson, Kim Edmonds, Tina Mackay, Mita Afroza Akther, Miriam Mitchison, Sam M. Janes, Giorgia Trevisan, Adrienne M. Flanagan, Alison Cluroe, Henning Walczak, Stuart Horswell, Lena Karapagniotou, Simon Tavaré, Sarah Sarker, Teresa Marafioti, Matt Krebs, Anna Green, Philippe Lamy, Reena Khiroya, Samantha M. Hill, Andrew Tutt, Ashish Chandra, Selvaraju Veeriah, Faye Gishen, Lisa Thompson, Sarah Vaughan, Stacey Stanislaw, Kevin Litchfield, Colin Watts, Caroline Dive, Zayd Tippu, Ron Sinclair, Merche Jimenez-Linan, Lavinia Spain, Lizi Manzano, Zoe Rhodes, Caroline Stirling, Elena Provenzano, Andrew Rowan, Katey S. S. Enfield, Vasiliki Michalarea, Nahid Sheikh, Antonia Toncheva, Charlotte Ferris, James Spicer, Kai-Keen Shiu, Aida Murra, Gerald Langman, Scott Thomas Colville Shepherd, Nicholas McGranahan, Fabio Gomes, Daniel Hochhauser, Hang Xu, Sergio A. Quezada, James Larkin, Siow Ming Lee, Chi-wah Lok, Massimo Loda, Gary Middleton, Hollie Bancroft, Jo Dransfield, David Moore, Jennifer Thomas, Rebecca C. Fitzgerald, Peter Colloby, Annika Fendler, Emma Beddowes, Ultan McDermott, Christopher Abbosh, Uzma Asghar, Martin Forster, John Le Quesne, Katherine F. Leith, Paddy Stone, Bernard Olisemeke, Bruce Tanchel, Laura Farrelly, Grant D. Stewart, Justine Korteweg, Sanjay Jogai, Nnenna Kanu, Desiree Schnidrig, Heidi Rosenbaum, Elaine Borg, Mat Carter, Anthony J. Chalmers, Andrew C. Kidd, Alexandre Harlé, Ula Mahadeva, Crispin T. Hiley, Fiona Byrne, Heather Shaw, Mariam Jamal-Hanjani, Karin A. Oien, Ian Proctor, Joanne Webb, Sioban Fraser, Sarah Howlett, Ruby Stewart, Peter Van Loo, Nadia Yousaf, Tanya Ahmad, Martin Collard, Sanjay Popat, James D. Brenton, Sarah Rudman, Lewis Au, David G. Harrison, Elias Pintus, Patricia Roxburgh, Olivia Curtis, Ben Deakin, Ariana Huebner, Debra Enting, Simranpreet Summan, S. Baijal, Iver Nordentoft, Carol Jones, Haixi Yan, Sebastian Brandner, Tariq Enver, Lara-Rose Iredale, Yvonne Summers, Babu Naidu, Abby Sharp, Stephen Hazell, Aoune Barhoumi, Emma Nye, Robert E. Hynds, Sharmistha Ghosh, Emilia L. Lim, Ben Shum, Nikki Hunter, John Bridgewater, Eleanor Carlyle, Stephan Beck, Nicolai Juul Birkbak, Steve Hazell, Samra Turajlic, Amy Kerr, Ian Tomlinson, Adrian Tookman

Publikováno v: PEACE Consortium & Blackhall, F 2020, ' Representative Sequencing : Unbiased Sampling of Solid Tumor Tissue ', Cell Reports, vol. 31, no. 5, 107550, pp. 107550 . https://doi.org/10.1016/j.celrep.2020.107550
Cell Reports
Cell Reports, Elsevier Inc, 2020, 31 (5), pp.107550. ⟨10.1016/j.celrep.2020.107550⟩
Litchfield, K, Stanislaw, S, Spain, L, Gallegos, L L, Rowan, A, Schnidrig, D, Rosenbaum, H, Harle, A, Au, L, Hill, S M, Tippu, Z, Thomas, J, Thompson, L, Xu, H, Horswell, S, Barhoumi, A, Jones, C, Leith, K F, Burgess, D L, Watkins, T B K, Lim, E, Birkbak, N J, Lamy, P, Nordentoft, I, Dyrskjøt, L, Pickering, L, Hazell, S, Jamal-Hanjani, M, PEACE Consortium, Larkin, J, Swanton, C, Alexander, N & Turajlic, S 2020, ' Representative Sequencing : Unbiased Sampling of Solid Tumor Tissue ', Cell Reports, vol. 31, no. 5, 107550 . https://doi.org/10.1016/j.celrep.2020.107550
Cell Reports, Vol 31, Iss 5, Pp-(2020)
Litchfield, K, Stanislaw, S, Spain, L, Gallegos, L L, Rowan, A, Schnidrig, D, Rosenbaum, H, Harle, A, Au, L, Hill, S M, Tippu, Z, Thomas, J, Thompson, L, Xu, H, Horswell, S, Barhoumi, A, Jones, C, Leith, K F, Burgess, D L, Watkins, T B K, Lim, E, Birkbak, N J, Lamy, P, Nordentoft, I, Dyrskjøt, L, Pickering, L, Hazell, S, Jamal-hanjani, M, Larkin, J, Swanton, C, Alexander, N, Turajlic, S, Abbosh, C, Shiu, K, Bridgewater, J, Hochhauser, D, Forster, M, Lee, S, Ahmad, T, Papadatos-pastos, D, Janes, S, Van Loo, P, Enfield, K, Mcgranahan, N, Huebner, A, Quezada, S, Beck, S, Parker, P, Walczak, H, Enver, T, Hynds, R, Falzon, M, Proctor, I, Sinclair, R, Lok, C, Rhodes, Z, Moore, D, Marafioti, T, Borg, E, Mitchison, M, Khiroya, R, Trevisan, G, Ellery, P, Linch, M, Brandner, S, Hiley, C, Veeriah, S, Razaq, M, Shaw, H, Attard, G, Akther, M A, Naceur-lombardelli, C, Manzano, L, Al-bakir, M, Summan, S, Kanu, N, Ward, S, Asghar, U, Lim, E, Gishen, F, Tookman, A, Stone, P, Stirling, C, Furness, A, Edmonds, K, Hunter, N, Sarker, S, Vaughan, S, Mangwende, M, Pearce, K, Spain, L, Shepherd, S, Yan, H, Shum, B, Carlyle, E, Hazell, S, Fendler, A, Byrne, F, Yousaf, N, Popat, S, Curtis, O, Stamp, G, Toncheva, A, Nye, E, Murra, A, Korteweg, J, Sheikh, N, Josephs, D, Chandra, A, Spicer, J, Mahadeva, U, Green, A, Stewart, R, Iredale, L, Mackay, T, Deakin, B, Enting, D, Rudman, S, Ghosh, S, Karapagniotou, L, Pintus, E, Tutt, A, Howlett, S, Michalarea, V, Brenton, J, Caldas, C, Fitzgerald, R, Jimenez-linan, M, Provenzano, E, Cluroe, A, Stewart, G, Watts, C, Gilbertson, R, Mcdermott, U, Tavare, S, Beddowes, E, Roxburgh, P, Biankin, A, Chalmers, A, Fraser, S, Oien, K, Kidd, A, Blyth, K, Krebs, M, Blackhall, F, Summers, Y, Dive, C, Marais, R, Gomes, F, Carter, M, Dransfield, J, Le Quesne, J, Fennell, D, Shaw, J, Naidu, B, Baijal, S, Tanchel, B, Langman, G, Robinson, A, Collard, M, Cockcroft, P, Ferris, C, Bancroft, H, Kerr, A, Middleton, G, Webb, J, Kadiri, S, Colloby, P, Olisemeke, B, Wilson, R, Tomlinson, I, Jogai, S, Ottensmeier, C, Harrison, D, Loda, M, Flanagan, A, Mckenzie, M, Hackshaw, A, Ledermann, J, Sharp, A, Farrelly, L & Bridger, H 2020, ' Representative Sequencing: Unbiased Sampling of Solid Tumor Tissue ', Cell Reports, vol. 31, no. 5, pp. 107550 . https://doi.org/10.1016/j.celrep.2020.107550
CELL REPORTS
Cell Reports, 2020, 31 (5), pp.107550. ⟨10.1016/j.celrep.2020.107550⟩

International audience; Although thousands of solid tumors have been sequenced to date, a fundamental under-sampling bias isinherent in current methodologies. This is caused by a tissue sample input of fixed dimensions (e.g., 6 mmbiopsy), which becom

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::40f254410047db4d0807701fbc62a8f6
https://www.repository.cam.ac.uk/handle/1810/305376