Zobrazeno 1 - 10
of 57
pro vyhledávání: '"Miquel A. Senar"'
Publikováno v:
Metabarcoding and Metagenomics, Vol 4, Iss , Pp 1-18 (2020)
Amplicon metabarcoding is an established technique to analyse the taxonomic composition of communities of organisms using high-throughput DNA sequencing, but there are doubts about its ability to quantify the relative proportions of the species, as o
Externí odkaz:
https://doaj.org/article/8b813c8cf0da43398e5349d701faffc8
Publikováno v:
PLoS ONE, Vol 17, Iss 10 (2022)
The use of high-throughput sequencing to recover short DNA reads of many species has been widely applied on biodiversity studies, either as amplicon metabarcoding or shotgun metagenomics. These reads are assigned to taxa using classifiers. However, f
Externí odkaz:
https://doaj.org/article/0eb625617412400bb38c17d3e9d8736d
Publikováno v:
Dipòsit Digital de Documents de la UAB
Universitat Autònoma de Barcelona
Universitat Autònoma de Barcelona
Altres ajuts: acords transformatius de la UAB Mito-metagenomics (MMG) is becoming an alternative to amplicon metabarcoding for the assessment of biodiversity in complex biological samples using high-throughput sequencing. Whereas MMG overcomes the bi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ee38e23cf9a0687353c62538426e38be
https://ddd.uab.cat/record/249254
https://ddd.uab.cat/record/249254
Publikováno v:
Metabarcoding and Metagenomics, Vol 4, Iss, Pp 1-18 (2020)
Metabarcoding and Metagenomics 4: e48281
Metabarcoding and Metagenomics 4: e48281
Amplicon metabarcoding is an established technique to analyse the taxonomic composition of communities of organisms using high-throughput DNA sequencing, but there are doubts about its ability to quantify the relative proportions of the species, as o
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::81f9209288538ca2577b67b8c52e0a58
https://doi.org/10.3897/mbmg.4.48281
https://doi.org/10.3897/mbmg.4.48281
Autor:
Josefina Lenis, Miquel A. Senar
Publikováno v:
Cluster Computing. 20:1909-1924
Over the last several years, many sequence alignment tools have appeared and become popular for the fast evolution of next generation sequencing technologies. Obviously, researchers that use such tools are interested in getting maximum performance wh
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0621af8b03a16626da8dc1b5f847868b
https://doi.org/10.1007/s10586-017-1015-0
https://doi.org/10.1007/s10586-017-1015-0
Autor:
Miquel A. Senar, Fernando Martínez-Peña, Javier Parladé, Carles Castaño, A. M. de Miguel, Joan Pera, M. Queralt, José Antonio Bonet, Josep Piñol
Publikováno v:
IRTA Pubpro. Open Digital Archive
Institut de Recerca i Tecnologia Agroalimentàries (IRTA)
Institut de Recerca i Tecnologia Agroalimentàries (IRTA)
Forest management aimed to maximize timber production might impact soil fungi, especially those symbiotically associated to tree roots. In this study, we analyse the temporal dynamics of soil fungi along five sampling years after tree removal in a ma
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b3e71e4f276e9603b10c3ada38d1689f
http://hdl.handle.net/20.500.12327/515
http://hdl.handle.net/20.500.12327/515
Exploring efficient data parallelism for genome read mapping on multicore and manycore architectures
Autor:
Miquel A. Senar, Shaolong Chen
Publikováno v:
Dipòsit Digital de Documents de la UAB
Universitat Autònoma de Barcelona
Universitat Autònoma de Barcelona
Nowadays heterogeneous architectures formed by multicore and manycore systems have become attractive solutions to cope with the data booming in genomic-based studies. Our work explores the efficient usage of heterogeneous architectures in such area.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9f3f619e0bdbea43bd0d79921098206b
https://ddd.uab.cat/record/223865
https://ddd.uab.cat/record/223865
Autor:
Miquel A. Senar, Shaolong Chen
Publikováno v:
ICCS
Nowadays, rapid progress in next generation sequencing (NGS) technologies has drastically decreased the cost and time required to obtain genome sequences. A series of powerful computing accelerators, such as GPUs and Xeon Phi MIC, are becoming a comm
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::414b17967b2b0784b0bff77e78410425
Autor:
Shaolong Chen, Miquel A. Senar
Publikováno v:
IPDPS Workshops
Due to the drastic increase in genome sequence data from the GB level to the TB level, a series of powerful computing accelerators depending on manycore architecture have been proposed to cope with this data challenge. GPU and Xeon Phi are the most p
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::93eebd5a2364b83d114920602d1c6466
https://doi.org/10.1109/ipdpsw.2018.00096
https://doi.org/10.1109/ipdpsw.2018.00096
Publikováno v:
Molecular ecology. 28(2)
DNA metabarcoding is a technique used to survey biodiversity in many ecological settings, but there are doubts about whether it can provide quantitative results, that is, the proportions of each species in the mixture as opposed to a species list. Wh
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b8c349bc4fa91d6e91577c446c8156b5
https://pubmed.ncbi.nlm.nih.gov/29939447
https://pubmed.ncbi.nlm.nih.gov/29939447