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pro vyhledávání: '"Minkin, Ilia"'
Motivation: De Bruijn graphs have been proposed as a data structure to facilitate the analysis of related whole genome sequences, in both a population and comparative genomic settings. However, current approaches do not scale well to many genomes of
Externí odkaz:
http://arxiv.org/abs/1602.05856
Autor:
Varabyou, Ales, Sommer, Markus J., Erdogdu, Beril, Shinder, Ida, Minkin, Ilia, Chao, Kuan-Hao, Park, Sukhwan, Heinz, Jakob, Pockrandt, Christopher, Shumate, Alaina, Rincon, Natalia, Puiu, Daniela, Steinegger, Martin, Salzberg, Steven L., Pertea, Mihaela
Publikováno v:
Genome Biology; 10/30/2023, Vol. 24 Issue 1, p1-16, 16p
Akademický článek
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Autor:
Sommer, Markus J., Sooyoung Cha, Varabyou, Ales, Rincon, Natalia, Park, Sukhwan, Minkin, Ilia, Pertea, Mihaela, Steinegger, Martin, Salzberg, Steven L.
Publikováno v:
eLife; 1/4/2023, p1-21, 21p
Akademický článek
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Autor:
Minkin, Ilia, Medvedev, Paul
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-11 (2020)
Nature Communications
Nature Communications
Multiple whole-genome alignment is a challenging problem in bioinformatics. Despite many successes, current methods are not able to keep up with the growing number, length, and complexity of assembled genomes, especially when computational resources
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::17ac6208bf8e99f7ea84bd1bed6d4c5b
https://doi.org/10.1101/548123
https://doi.org/10.1101/548123
Akademický článek
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Autor:
Minkin I; Department of Biomedical Engineering, Center for Computational Biology, Johns Hopkins University, Baltimore, MD 21211, USA., Salzberg SL; Department of Biomedical Engineering, Center for Computational Biology, Department of Computer Science, Department of Biostatistics, Johns Hopkins University, Baltimore, MD 21211, USA.
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2024 May 14. Date of Electronic Publication: 2024 May 14.
Autor:
Llamas B; Australian Centre for Ancient DNA, School of Biological Sciences, Environment Institute, The University of Adelaide, Adelaide, South Australia, 5005, Australia., Narzisi G; New York Genome Center, New York, NY, 10013, USA., Schneider V; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA., Audano PA; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, 98195, USA., Biederstedt E; Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA., Blauvelt L; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Bradbury P; Robert W. Holley Center, USDA-ARS, Ithaca, NY, 14853, USA., Chang X; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Chin CS; DNAnexus, Mountain View, CA, 94040, USA., Fungtammasan A; DNAnexus, Mountain View, CA, 94040, USA., Clarke WE; New York Genome Center, New York, NY, 10013, USA., Cleary A; National Center for Genome Resources 87505, Santa Fe, NM, 87505, USA., Ebler J; Max Planck Institute for Informatics, Saarbrücken, Germany., Eizenga J; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Sibbesen JA; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Markello CJ; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Garrison E; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Garg S; Department of Genetics, Harvard Medical School, Boston, MA, 02115, USA., Hickey G; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Lazo GR; Western Regional Research Center, USDA-ARS, Albany, CA, 94710-1105, USA., Lin MF; mlin.net LLC, San Jose, CA, 95113, USA., Mahmoud M; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston TX, TX, 77030, USA., Marschall T; Max Planck Institute for Informatics, Saarbrücken, Germany., Minkin I; Department of Computer Science and Engineering, The Pennsylvania State University, University Park, PA, 16802, USA., Monlong J; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Musunuri RL; New York Genome Center, New York, NY, 10013, USA., Sagayaradj S; Genome Center, University of California, Davis, Davis, CA, USA.; BASF, West Sacramento, CA, USA., Novak AM; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Rautiainen M; Max Planck Institute for Informatics, Saarbrücken, Germany., Regier A; McDonnell Genome Institute, Washington University in St Louis, St Louis, MO, 63108, USA., Sedlazeck FJ; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston TX, TX, 77030, USA., Siren J; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Souilmi Y; Australian Centre for Ancient DNA, School of Biological Sciences, Environment Institute, The University of Adelaide, Adelaide, South Australia, 5005, Australia., Wagner J; Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, 20899, USA., Wrightsman T; Section of Plant Breeding and Genetics, Cornell University, Ithaca, NY, 14853, USA., Yokoyama TT; Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, Japan., Zeng Q; Laboratory Corporation of America Holdings, Westborough, MA, 01581, USA., Zook JM; Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, 20899, USA., Paten B; Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA., Busby B; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA.
Publikováno v:
F1000Research [F1000Res] 2019 Oct 14; Vol. 8, pp. 1751. Date of Electronic Publication: 2019 Oct 14 (Print Publication: 2019).