Zobrazeno 1 - 10
of 68
pro vyhledávání: '"Min S. Kim"'
Autor:
Angela Collins, Edward K. Wakeland, Prithvi Raj, Min S. Kim, Jiwoong Kim, Naureen G. Tareen, Lawson A.B. Copley
Publikováno v:
Heliyon, Vol 4, Iss 6, Pp e00674- (2018)
Background: Children with acute hematogenous osteomyelitis (AHO) have a broad spectrum of illness ranging from mild to severe. The purpose of this study is to evaluate the impact of genomic variation of Staphylococcus aureus on clinical phenotype of
Externí odkaz:
https://doaj.org/article/4353ffe206f8417cac393639c3beba9e
Autor:
Sehwan Chun, Chan-Bum Choi, Min S. Kim, Jae-Yong Nam, Tae Y. Lee, Young-Tae Lee, SungHoon Kim, Sang-Bae Han, Sang-Cheol Bae
Publikováno v:
Lupus. 31:1245-1253
Objective Several clinical trials aimed at treating various autoimmune diseases, including systemic lupus erythematosus (SLE), by introducing mesenchymal stem cells (MSCs) have been conducted. However, with refractory lupus nephritis (LN), the outcom
Autor:
James Brugarolas, Somasekar Seshagiri, Steffen Durinck, Zora Modrusan, Eric Stawiski, Jingxuan He, Wenbin Guo, Xin Luo, Jose Torrealba, Alexander Filatenkov, Mingyi Chen, Zhiqun Xie, Christina Stevens, Oreoluwa Onabolu, Danni Luo, Xinlei Wang, Min S. Kim, Allison Joyce, Tiffani McKenzie, Yi-Feng Gu, Qurratulain Yousuf, Leonard D. Goldstein, He Zhang, Jason J. Luke, Ivan Pedrosa, Ze Zhang, Raquibul Hannan, Bijay S. Jaiswal, Payal Kapur, Rong Lu, Tao Wang
List of UTSW KCP patients with RNA-Seq and exome-seq. Sheet 1 contains information of 35 patients whose matched trio RNA-Seq data were used in the primary DisHet analyses. Sheet 2 contains information of patients whose bulk tumors were analyzed by RN
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::44154a4e8fdbd6f699a8e21dfeb4be94
https://doi.org/10.1158/2159-8290.22532821
https://doi.org/10.1158/2159-8290.22532821
Autor:
James Brugarolas, Somasekar Seshagiri, Steffen Durinck, Zora Modrusan, Eric Stawiski, Jingxuan He, Wenbin Guo, Xin Luo, Jose Torrealba, Alexander Filatenkov, Mingyi Chen, Zhiqun Xie, Christina Stevens, Oreoluwa Onabolu, Danni Luo, Xinlei Wang, Min S. Kim, Allison Joyce, Tiffani McKenzie, Yi-Feng Gu, Qurratulain Yousuf, Leonard D. Goldstein, He Zhang, Jason J. Luke, Ivan Pedrosa, Ze Zhang, Raquibul Hannan, Bijay S. Jaiswal, Payal Kapur, Rong Lu, Tao Wang
The full technical details of DisHet
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7e2e0a2d9909382bbf1aa83d172164ad
https://doi.org/10.1158/2159-8290.22532824.v1
https://doi.org/10.1158/2159-8290.22532824.v1
Autor:
James Brugarolas, Somasekar Seshagiri, Steffen Durinck, Zora Modrusan, Eric Stawiski, Jingxuan He, Wenbin Guo, Xin Luo, Jose Torrealba, Alexander Filatenkov, Mingyi Chen, Zhiqun Xie, Christina Stevens, Oreoluwa Onabolu, Danni Luo, Xinlei Wang, Min S. Kim, Allison Joyce, Tiffani McKenzie, Yi-Feng Gu, Qurratulain Yousuf, Leonard D. Goldstein, He Zhang, Jason J. Luke, Ivan Pedrosa, Ze Zhang, Raquibul Hannan, Bijay S. Jaiswal, Payal Kapur, Rong Lu, Tao Wang
Annotation of eTME genes. eTME genes (3x) are shown in the table. The "eTME (20x)" column shows eTME genes that satisfy the 20x cutoff. The other columns show the interpretation of the eTME genes using BLUEPRINT data, the Winslow signatures, Immunome
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a7e08bbc4dd24e270961bf8a10e4d34e
https://doi.org/10.1158/2159-8290.22532818.v1
https://doi.org/10.1158/2159-8290.22532818.v1
Autor:
James Brugarolas, Somasekar Seshagiri, Steffen Durinck, Zora Modrusan, Eric Stawiski, Jingxuan He, Wenbin Guo, Xin Luo, Jose Torrealba, Alexander Filatenkov, Mingyi Chen, Zhiqun Xie, Christina Stevens, Oreoluwa Onabolu, Danni Luo, Xinlei Wang, Min S. Kim, Allison Joyce, Tiffani McKenzie, Yi-Feng Gu, Qurratulain Yousuf, Leonard D. Goldstein, He Zhang, Jason J. Luke, Ivan Pedrosa, Ze Zhang, Raquibul Hannan, Bijay S. Jaiswal, Payal Kapur, Rong Lu, Tao Wang
By leveraging tumorgraft (patient-derived xenograft) RNA-sequencing data, we developed an empirical approach, DisHet, to dissect the tumor microenvironment (eTME). We found that 65% of previously defined immune signature genes are not abundantly expr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::010b18ebe78bf41d90220e8e435388a2
https://doi.org/10.1158/2159-8290.c.6546844
https://doi.org/10.1158/2159-8290.c.6546844
Autor:
James Brugarolas, Somasekar Seshagiri, Steffen Durinck, Zora Modrusan, Eric Stawiski, Jingxuan He, Wenbin Guo, Xin Luo, Jose Torrealba, Alexander Filatenkov, Mingyi Chen, Zhiqun Xie, Christina Stevens, Oreoluwa Onabolu, Danni Luo, Xinlei Wang, Min S. Kim, Allison Joyce, Tiffani McKenzie, Yi-Feng Gu, Qurratulain Yousuf, Leonard D. Goldstein, He Zhang, Jason J. Luke, Ivan Pedrosa, Ze Zhang, Raquibul Hannan, Bijay S. Jaiswal, Payal Kapur, Rong Lu, Tao Wang
Gene ontology analysis shows enriched GO terms of the 904 eTME genes (20x cutoff) (first sheet), the 778 and the 610 eTME genes (20x cutoff) that are not captured by the Immunome alone and Immunome+ESTIMATE+Winslow gene signatures (second and third s
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::eaa48808ba34476d63c1a55fc31d147e
https://doi.org/10.1158/2159-8290.22532815
https://doi.org/10.1158/2159-8290.22532815
Autor:
James Brugarolas, Somasekar Seshagiri, Steffen Durinck, Zora Modrusan, Eric Stawiski, Jingxuan He, Wenbin Guo, Xin Luo, Jose Torrealba, Alexander Filatenkov, Mingyi Chen, Zhiqun Xie, Christina Stevens, Oreoluwa Onabolu, Danni Luo, Xinlei Wang, Min S. Kim, Allison Joyce, Tiffani McKenzie, Yi-Feng Gu, Qurratulain Yousuf, Leonard D. Goldstein, He Zhang, Jason J. Luke, Ivan Pedrosa, Ze Zhang, Raquibul Hannan, Bijay S. Jaiswal, Payal Kapur, Rong Lu, Tao Wang
Sup. Fig. 1 Simulation analyses show accurate dissection of bulk tumor RNA-Seq data by DisHet. Sup. Fig. 2 Validating immune/stroma component expression dissected by DisHet. Sup. Fig. 3 Comparison of dissection performance of DeMix and DisHet. Sup. F
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::52ea04cd25ae475dcb47212aa2a0afc1
https://doi.org/10.1158/2159-8290.22532827.v1
https://doi.org/10.1158/2159-8290.22532827.v1
Autor:
Angelique W. Whitehurst, John B. MacMillan, John D. Minna, Anthony J. Davis, Bruce A. Posner, Ignacio I. Wistuba, Jaime Rodriguez-Canales, Pamela A. Villalobos, Sydnie A. LaDuke, Prema L. Mallipeddi, Janapriya Saha, Min S. Kim, Jingsheng Yan, Kathleen McGlynn, Elizabeth A. McMillan, Nathaniel W. Oswald, Brandt A. Nichols
Figure S1- Piericidin A and HORMAD1 association identified by NPF screen; Figure S2- Piericidin A induces DNA damage in NSCLC lines; Figure S3- S2N and geneset overlaps for HORMAD1 high LUAD tumors.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3ee52d7a62cbdfc6fd5c220bfb487a8e
https://doi.org/10.1158/0008-5472.22419254.v1
https://doi.org/10.1158/0008-5472.22419254.v1
Autor:
Angelique W. Whitehurst, John B. MacMillan, John D. Minna, Anthony J. Davis, Bruce A. Posner, Ignacio I. Wistuba, Jaime Rodriguez-Canales, Pamela A. Villalobos, Sydnie A. LaDuke, Prema L. Mallipeddi, Janapriya Saha, Min S. Kim, Jingsheng Yan, Kathleen McGlynn, Elizabeth A. McMillan, Nathaniel W. Oswald, Brandt A. Nichols
Top 10% (251 genes) identified by S2N analysis to be upregulated in HORMAD1 high LUAD tumors
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1d0691c16f34881d9c5389b7bd030ea0
https://doi.org/10.1158/0008-5472.22419251.v1
https://doi.org/10.1158/0008-5472.22419251.v1