Zobrazeno 1 - 10
of 24
pro vyhledávání: '"Miljovska, Sofija"'
Autor:
Arenas-Mena, César1,2 (AUTHOR) cesar.arenasmena@csi.cuny.edu, Miljovska, Sofija3 (AUTHOR), Rice, Edward J.4 (AUTHOR), Gurges, Justin1 (AUTHOR), Shashikant, Tanvi5 (AUTHOR), Wang, Zihe1 (AUTHOR), Ercan, Sevinç3,6 (AUTHOR), Danko, Charles G.4,7 (AUTHOR)
Publikováno v:
BMC Genomics. 10/19/2021, Vol. 22 Issue 1, p1-15. 15p.
Autor:
Arenas-Mena, César, Miljovska, Sofija, Rice, Edward J., Gurges, Justin, Shashikant, Tanvi, Wang, Zihe, Ercan, Sevinç, Danko, Charles G.
Additional file 1.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4b7a31e294642011e0ff9bcdf3ef4fc6
Autor:
Arenas-Mena, César, Miljovska, Sofija, Rice, Edward J., Gurges, Justin, Shashikant, Tanvi, Wang, Zihe, Ercan, Sevinç, Danko, Charles G.
Additional file 6: Fig. S4. Evaluation of models for CRMs overlapping and not overlapping promoters. A, 12 h embryo and, B, 20 h embryo models trained and tested with CRMs not overlapping promoters. C, 12 h embryo and, D, 20 h embryo models trained a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::532786bcac6d2e711addcc80009ddce8
Autor:
Arenas-Mena, César, Miljovska, Sofija, Rice, Edward J., Gurges, Justin, Shashikant, Tanvi, Wang, Zihe, Ercan, Sevinç, Danko, Charles G.
Additional file 7: Fig. S5. Quantitative prediction of enhancer activity from ATAC and PRO-seq data. Plot of the hold-out predicted and actual reporter expression of linear regression models using ATAC and PRO-seq signal in 12 h and 20 h stages. Viol
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::229e45901634244d88dbb4b6b4a74b64
Autor:
Arenas-Mena, César, Miljovska, Sofija, Rice, Edward J., Gurges, Justin, Shashikant, Tanvi, Wang, Zihe, Ercan, Sevinç, Danko, Charles G.
Additional file 8: Fig. S6. Summary 12 to 20 h mRNA expression changes of regulatory genes. The fold change in the mRNA expression levels quantified at high resolution for 31 of the 37 genes used in this study [33].
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::087cac0116885e46dd6fc11ba8cc81c9
Autor:
Arenas-Mena, César, Miljovska, Sofija, Rice, Edward J., Gurges, Justin, Shashikant, Tanvi, Wang, Zihe, Ercan, Sevinç, Danko, Charles G.
Additional file 3: Fig. S1. Promoter and CRM PRO-, ATAC- and ChIP-seq analysis.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7f54edba1149be2da80a9f811aefd802
Autor:
Arenas-Mena, César, Miljovska, Sofija, Rice, Edward J., Gurges, Justin, Shashikant, Tanvi, Wang, Zihe, Ercan, Sevinç, Danko, Charles G.
Additional file 4: Fig. S2. PRO-, Pol II ChIP- and ATAC-seq at onecut, gcm, gatae and delta. A, onecut, the entire region was scanned for enhancer activity by overlapping reporter constructs averaging 2.23 Kb [40]. Similar snapshots are taken for oth
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::394b6c4911d07c072a9242510af0e036
Autor:
Arenas-Mena, César, Miljovska, Sofija, Rice, Edward J., Gurges, Justin, Shashikant, Tanvi, Wang, Zihe, Ercan, Sevinç, Danko, Charles G.
Additional file 5: Fig. S3. The enhancer activity of promoter-overlapping CRMs is independent of their orientation. A, the concurrent orientation of the promoter in the GFP reporter construct and the promoter of promoter-overlapping CRMs could in pri
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::60d31a1dda32e5a3a407594e255c31f6
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