Zobrazeno 1 - 10
of 24
pro vyhledávání: '"Mikang Sim"'
Autor:
Mikang Sim, Jongin Lee, Daehong Kwon, Daehwan Lee, Nayoung Park, Suyeon Wy, Younhee Ko, Jaebum Kim
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 21, Iss , Pp 444-451 (2023)
Constructing accurate microbial genome assemblies is necessary to understand genetic diversity in microbial genomes and its functional consequences. However, it still remains as a challenging task especially when only short-read sequencing technologi
Externí odkaz:
https://doaj.org/article/1510106d81d24290bcfee5ca828b533f
Publikováno v:
BMC Bioinformatics, Vol 23, Iss 1, Pp 1-13 (2022)
Abstract Background DNA methylation is an important epigenetic modification that is known to regulate gene expression. Whole-genome bisulfite sequencing (WGBS) is a powerful method for studying cytosine methylation in a whole genome. However, it is d
Externí odkaz:
https://doaj.org/article/8f002f07357741e8becfcc519e3fab1c
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-17 (2020)
Abstract Background Microorganisms are important occupants of many different environments. Identifying the composition of microbes and estimating their abundance promote understanding of interactions of microbes in environmental samples. To understan
Externí odkaz:
https://doaj.org/article/0f307eaee62f45cc9e1c3ca21a28df0d
Publikováno v:
BMC Bioinformatics, Vol 19, Iss 1, Pp 1-7 (2018)
Abstract Background Advances in sequencing technologies have facilitated large-scale comparative genomics based on whole genome sequencing. Constructing and investigating conserved genomic regions among multiple species (called synteny blocks) are es
Externí odkaz:
https://doaj.org/article/b41708c34548489d9ab9c027906853c5
Publikováno v:
KIISE Transactions on Computing Practices. 27:331-337
Autor:
Mikang, Sim, Jongin, Lee, Daehong, Kwon, Daehwan, Lee, Nayoung, Park, Suyeon, Wy, Younhee, Ko, Jaebum, Kim
Publikováno v:
Computational and structural biotechnology journal. 21
Constructing accurate microbial genome assemblies is necessary to understand genetic diversity in microbial genomes and its functional consequences. However, it still remains as a challenging task especially when only short-read sequencing technologi
Publikováno v:
GigaScience. 11
Background Metagenomic assembly using high-throughput sequencing data is a powerful method to construct microbial genomes in environmental samples without cultivation. However, metagenomic assembly, especially when only short reads are available, is
Additional file 2: Supplementary Figure S1. Performance evaluation results of read classification for the genus rank. Boxplots indicate the distribution of (A) F1-score, (B) recall and (C) precision of read classification in 10 genomes dataset (left)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3ac50b310b99eab962c14080047293f9
Publikováno v:
Current protocols in bioinformaticsLiterature Cited. 68(1)
INTER-Species Protein Interaction Analysis (INTERSPIA) is a web application for identifying diverse patterns of protein-protein interactions (PPIs) in different species. Given a set of proteins of interest to the user, INTERSPIA first discovers addit
Publikováno v:
Nucleic Acids Research
Proteins perform biological functions through cascading interactions with each other by forming protein complexes. As a result, interactions among proteins, called protein-protein interactions (PPIs) are not completely free from selection constraint