Single-fly genome assemblies fill major phylogenomic gaps across the Drosophilidae Tree of Life.

Autor: Bernard Y Kim, Hannah R Gellert, Samuel H Church, Anton Suvorov, Sean S Anderson, Olga Barmina, Sofia G Beskid, Aaron A Comeault, K Nicole Crown, Sarah E Diamond, Steve Dorus, Takako Fujichika, James A Hemker, Jan Hrcek, Maaria Kankare, Toru Katoh, Karl N Magnacca, Ryan A Martin, Teruyuki Matsunaga, Matthew J Medeiros, Danny E Miller, Scott Pitnick, Michele Schiffer, Sara Simoni, Tessa E Steenwinkel, Zeeshan A Syed, Aya Takahashi, Kevin H-C Wei, Tsuya Yokoyama, Michael B Eisen, Artyom Kopp, Daniel Matute, Darren J Obbard, Patrick M O'Grady, Donald K Price, Masanori J Toda, Thomas Werner, Dmitri A Petrov

Publikováno v: PLoS Biology, Vol 22, Iss 7, p e3002697 (2024)

Long-read sequencing is driving rapid progress in genome assembly across all major groups of life, including species of the family Drosophilidae, a longtime model system for genetics, genomics, and evolution. We previously developed a cost-effective

Externí odkaz: https://doaj.org/article/2beb7f36060d498498a23258a4f431c2

Genomic changes associated with adaptation to arid environments in cactophilic Drosophila species

Autor: Rahul V. Rane, Stephen L. Pearce, Fang Li, Chris Coppin, Michele Schiffer, Jennifer Shirriffs, Carla M. Sgrò, Philippa C. Griffin, Goujie Zhang, Siu F. Lee, Ary A. Hoffmann, John G. Oakeshott

Publikováno v: BMC Genomics, Vol 20, Iss 1, Pp 1-22 (2019)

Abstract Background Insights into the genetic capacities of species to adapt to future climate change can be gained by using comparative genomic and transcriptomic data to reconstruct the genetic changes associated with such adaptations in the past.

Externí odkaz: https://doaj.org/article/73eaf9a3ae0e41ef95f667bd2273b735

Into the wild - a field study on the evolutionary and ecological importance of thermal plasticity in ectotherms across temperate and tropical regions

Autor: Natasja K. Noer, Michael Ørsted, Michele Schiffer, Ary A. Hoffmann, Simon Bahrndorff, Torsten N. Kristensen

Publikováno v: Noer, N K, Ørsted, M, Schiffer, M, Hoffmann, A A, Bahrndorff, S & Kristensen, T N 2022, ' Into the wild-a field study on the evolutionary and ecological importance of thermal plasticity in ectotherms across temperate and tropical regions ', Philosophical Transactions of the Royal Society B: Biological Sciences, vol. 377, no. 1846, 20210004 . https://doi.org/10.1098/rstb.2021.0004
Philos Trans R Soc Lond B Biol Sci

Understanding how environmental factors affect the thermal tolerance of species is crucial for predicting the impact of thermal stress on species abundance and distribution. To date, species' responses to thermal stress are typically assessed on labo

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::469f9da7be925429bb8a822248e5f934
https://vbn.aau.dk/da/publications/795a165a-1bfb-4fb4-8c4d-dfd41cf94f98

Genomic changes associated with adaptation to arid environments in cactophilic Drosophila species

Autor: Ary A. Hoffmann, Stephen L. Pearce, Fang Li, Siu F. Lee, Goujie Zhang, Philippa C. Griffin, Jennifer Shirriffs, Carla M. Sgrò, Rahul V. Rane, Michele Schiffer, John G. Oakeshott, Chris W. Coppin

Publikováno v: BMC Genomics, Vol 20, Iss 1, Pp 1-22 (2019)
Rane, R V, Pearce, S L, Li, F, Coppin, C, Schiffer, M, Shirriffs, J, Sgro, C M, Griffin, P C, Zhang, G, Lee, S F, Hoffmann, A A & Oakeshott, J G 2019, ' Genomic changes associated with adaptation to arid environments in cactophilic Drosophila species ', BMC Genomics, vol. 20, 52, pp. 1-22 . https://doi.org/10.1186/s12864-018-5413-3
BMC Genomics

Background Insights into the genetic capacities of species to adapt to future climate change can be gained by using comparative genomic and transcriptomic data to reconstruct the genetic changes associated with such adaptations in the past. Here we i

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::73d2474c0771244c89b73f64c9f0a35c
http://link.springer.com/article/10.1186/s12864-018-5413-3

Phylogenomic analyses of the genus Drosophila reveals genomic signals of climate adaptation

Autor: Michele Schiffer, Fiona Elizabeth Cockerell, Carla M. Sgrò, Guojie Zhang, Gabriel Santpere, Jessica A. Weber, Fang Li, Stephen L. Pearce, Rahul V. Rane, Jennifer Shirriffs, Victor Luria, Marc W. Kirschner, Chris W. Coppin, John G. Oakeshott, Ary A. Hoffmann, Kerensa McElroy, Jiawei Chen, Siu F. Lee, Renee A. Catullo, Philippa C. Griffin, Zijun Xiong, Amir Karger, Zimai Li, Ann Jacob Stocker, John W. Cain

Publikováno v: Li, F, Rane, R V, Luria, V, Xiong, Z, Chen, J, Li, Z, Catullo, R A, Griffin, P C, Schiffer, M, Pearce, S, Lee, S F, McElroy, K, Stocker, A, Shirriffs, J, Cockerell, F, Coppin, C, Sgrò, C M, Karger, A, Cain, J W, Weber, J A, Santpere, G, Kirschner, M W, Hoffmann, A A, Oakeshott, J G & Zhang, G 2022, ' Phylogenomic analyses of the genus Drosophila reveals genomic signals of climate adaptation ', Molecular Ecology Resources, vol. 22, no. 4, pp. 1559-1581 . https://doi.org/10.1111/1755-0998.13561

Many Drosophila species differ widely in their distributions and climate niches, making them excellent subjects for evolutionary genomic studies. Here, we have developed a database of high-quality assemblies for 46 Drosophila species and one closely

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2526521f7fa7b8025817ad9f96e9b105
https://pubmed.ncbi.nlm.nih.gov/34839580