Metatranscriptomics profile of the gill microbial community during Bathymodiolus azoricus aquarium acclimatization at atmospheric pressure

Autor: Inês Barros, Hugo Froufe, George Marnellos, Conceição Egas, Jennifer Delaney, Michele Clamp, Ricardo Serrão Santos, Raul Bettencourt

Publikováno v: AIMS Microbiology, Vol 4, Iss 2, Pp 240-260 (2018)

Background: The deep-sea mussels Bathymodiolus azoricus (Bivalvia: Mytilidae) are the dominant macrofauna subsisting at the hydrothermal vents site Menez Gwen in the Mid-Atlantic Ridge (MAR). Their adaptive success in such challenging environments is

Externí odkaz: https://doaj.org/article/805136d6ac3846839be4bcfc0f37dce3

Metatranscriptomics profile of the gill microbial community during Bathymodiolus azoricus aquarium acclimatization at atmospheric pressure

Autor: Ricardo S. Santos, Michele Clamp, Raul Bettencourt, Inês Barros, Hugo J.C. Froufe, Conceição Egas, George Marnellos, Jennifer Delaney

Publikováno v: AIMS Microbiology. 4:240-260

Background: The deep-sea mussels Bathymodiolus azoricus (Bivalvia: Mytilidae) are the dominant macrofauna subsisting at the hydrothermal vents site Menez Gwen in the Mid-Atlantic Ridge (MAR). Their adaptive success in such challenging environments is

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::d6d73835ede84fb77798f6367bfcbe7c
https://doi.org/10.3934/microbiol.2018.2.240

Convergent regulatory evolution and loss of flight in paleognathous birds

Autor: Michele Clamp, Phil Grayson, Alison Cloutier, Allan J. Baker, Jun Liu, Nicole E. Wheeler, Julia A. Clarke, Timothy B. Sackton, Zhirui Hu, Scott V. Edwards, Paul P. Gardner

Publikováno v: Science (New York, N.Y.). 364(6435)

A core question in evolutionary biology is whether convergent phenotypic evolution is driven by convergent molecular changes in proteins or regulatory regions. We combined phylogenomic, developmental, and epigenomic analysis of 11 new genomes of pale

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::90c153409f8198268704da6f2e7f197b
https://pubmed.ncbi.nlm.nih.gov/30948549

Convergent regulatory evolution and the origin of flightlessness in palaeognathous birds

Autor: Jun Liu, Scott V. Edwards, Alison Cloutier, Michele Clamp, Julia A. Clarke, Allan J. Baker, Timothy B. Sackton, Nicole E. Wheeler, Zhirui Hu, Paul P. Gardner, Phil Grayson

The relative roles of regulatory and protein evolution in the origin and loss of convergent phenotypic traits is a core question in evolutionary biology. Here we combine phylogenomic, epigenomic and developmental data to show that convergent evolutio

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3b96a7bedaf5190925d52dcc24788340
https://doi.org/10.1101/262584

A high-resolution map of human evolutionary constraint using 29 mammals

Autor: Kerstin, Lindblad-Toh, Manuel, Garber, Or, Zuk, Michael F, Lin, Brian J, Parker, Stefan, Washietl, Pouya, Kheradpour, Jason, Ernst, Gregory, Jordan, Evan, Mauceli, Lucas D, Ward, Craig B, Lowe, Alisha K, Holloway, Michele, Clamp, Sante, Gnerre, Jessica, Alföldi, Kathryn, Beal, Jean, Chang, Hiram, Clawson, James, Cuff, Federica, Di Palma, Stephen, Fitzgerald, Paul, Flicek, Mitchell, Guttman, Melissa J, Hubisz, David B, Jaffe, Irwin, Jungreis, W James, Kent, Dennis, Kostka, Marcia, Lara, Andre L, Martins, Tim, Massingham, Ida, Moltke, Brian J, Raney, Matthew D, Rasmussen, Jim, Robinson, Alexander, Stark, Albert J, Vilella, Jiayu, Wen, Xiaohui, Xie, Michael C, Zody, Jen, Baldwin, Toby, Bloom, Chee Whye, Chin, Dave, Heiman, Robert, Nicol, Chad, Nusbaum, Sarah, Young, Jane, Wilkinson, Kim C, Worley, Christie L, Kovar, Donna M, Muzny, Richard A, Gibbs, Andrew, Cree, Huyen H, Dihn, Gerald, Fowler, Shalili, Jhangiani, Vandita, Joshi, Sandra, Lee, Lora R, Lewis, Lynne V, Nazareth, Geoffrey, Okwuonu, Jireh, Santibanez, Wesley C, Warren, Elaine R, Mardis, George M, Weinstock, Richard K, Wilson, Kim, Delehaunty, David, Dooling, Catrina, Fronik, Lucinda, Fulton, Bob, Fulton, Tina, Graves, Patrick, Minx, Erica, Sodergren, Ewan, Birney, Elliott H, Margulies, Javier, Herrero, Eric D, Green, David, Haussler, Adam, Siepel, Nick, Goldman, Katherine S, Pollard, Jakob S, Pedersen, Eric S, Lander, Manolis, Kellis

Publikováno v: Nature
PubMed Central
Lindblad-Toh, K, Garber, M, Zuk, O, Lin, M F, Parker, B J, Washietl, S, Kheradpour, P, Ernst, J, Jordan, G, Mauceli, E, Ward, L D, Lowe, C B, Holloway, A K, Clamp, M, Gnerre, S, Alföldi, J, Beal, K, Chang, J, Clawson, H, Cuff, J, Di Palma, F, Fitzgerald, S, Flicek, P, Guttman, M, Hubisz, M J, Jaffe, D B, Jungreis, I, Kent, W J, Kostka, D, Lara, M, Martins, A L, Massingham, T, Moltke, I, Raney, B J, Rasmussen, M D, Robinson, J, Stark, A, Vilella, A J, Wen, J, Xie, X, Zody, M C, Baldwin, J, Bloom, T, Chin, C W, Heiman, D, Nicol, R, Nusbaum, C, Young, S, Wilkinson, J, Pedersen, J S & Broad Institute Sequencing Platform and Whole Genome Assembly Team 2011, ' A high-resolution map of human evolutionary constraint using 29 mammals ', Nature, vol. 478, no. 7370, pp. 476-82 . https://doi.org/10.1038/nature10530

The comparison of related genomes has emerged as a powerful lens for genome interpretation. Here we report the sequencing and comparative analysis of 29 eutherian genomes. We confirm that at least 5.5% of the human genome has undergone purifying sele

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::669061f2d8cec3d08d25af001dba00db
http://europepmc.org/articles/PMC3207357