Zobrazeno 1 - 10
of 25
pro vyhledávání: '"Michael J Roach"'
Autor:
Michael J Roach, N Tessa Pierce-Ward, Radoslaw Suchecki, Vijini Mallawaarachchi, Bhavya Papudeshi, Scott A Handley, C Titus Brown, Nathan S Watson-Haigh, Robert A Edwards
Publikováno v:
PLoS Computational Biology, Vol 18, Iss 12, p e1010705 (2022)
Externí odkaz:
https://doaj.org/article/cf26512e554040fca590f5ebab4a6f0a
Autor:
Michael J Roach, Daniel L Johnson, Joerg Bohlmann, Hennie J J van Vuuren, Steven J M Jones, Isak S Pretorius, Simon A Schmidt, Anthony R Borneman
Publikováno v:
PLoS Genetics, Vol 14, Iss 11, p e1007807 (2018)
Chardonnay is the basis of some of the world's most iconic wines and its success is underpinned by a historic program of clonal selection. There are numerous clones of Chardonnay available that exhibit differences in key viticultural and oenological
Externí odkaz:
https://doaj.org/article/f7227cae27934eaaac27347fd554f12e
Autor:
Michael J. Roach, Anthony R. Borneman
Publikováno v:
BMC Genomics, Vol 21, Iss 1, Pp 1-14 (2020)
Abstract Background Yeasts of the genus Brettanomyces are of significant interest, both for their capacity to spoil, as well as their potential to positively contribute to different industrial fermentations. However, considerable variance exists in t
Externí odkaz:
https://doaj.org/article/a5379a0d60744292bb54b107eb7100df
Publikováno v:
BMC Bioinformatics, Vol 19, Iss 1, Pp 1-10 (2018)
Abstract Background Recent developments in third-gen long read sequencing and diploid-aware assemblers have resulted in the rapid release of numerous reference-quality assemblies for diploid genomes. However, assembly of highly heterozygous genomes i
Externí odkaz:
https://doaj.org/article/b9b8fed1bba94d49a913af4db16e2449
Autor:
Evan Pargin, Michael J. Roach, Amber Skye, Bhavya Papudeshi, Laura K. Inglis, Vijini Mallawaarachchi, Susanna R. Grigson, Clarice Harker, Robert A. Edwards, Sarah K. Giles
Publikováno v:
Frontiers in Microbiology. 14
The gut virome is an incredibly complex part of the gut ecosystem. Gut viruses play a role in many disease states, but it is unknown to what extent the gut virome impacts everyday human health. New experimental and bioinformatic approaches are requir
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3d6b21b0e1dcaedb7bdc3e98d9b76e03
https://doi.org/10.3389/fmicb.2023.963173
https://doi.org/10.3389/fmicb.2023.963173
Publikováno v:
bioRxiv
Phages integrated into a bacterial genome–called prophages–continuously monitor the health of the host bacteria to determine when to escape the genome, protect their host from other phage infections, and may provide genes that promote bacterial g
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f393947b60566550fdde4396a42767c8
https://doi.org/10.1101/2023.05.04.539508
https://doi.org/10.1101/2023.05.04.539508
Autor:
Jody C. McKerral, Bhavya Papudeshi, Laura K. Inglis, Michael J. Roach, Przemyslaw Decewicz, Katelyn McNair, Antoni Luque, Elizabeth A. Dinsdale, Robert A. Edwards
Publikováno v:
bioRxiv
Phages dominate every ecosystem on the planet. While virulent phages sculpt the microbiome by killing their bacterial hosts, temperate phages provide unique growth advantages to their hosts through lysogenic conversion. Many prophages benefit their h
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2ca4aa00123a484694216437915dc4b7
https://europepmc.org/articles/PMC10153245/
https://europepmc.org/articles/PMC10153245/
Autor:
Vijini Mallawaarachchi, Michael J. Roach, Bhavya Papudeshi, Sarah K. Giles, Susanna R. Grigson, Przemyslaw Decewicz, George Bouras, Ryan D. Hesse, Laura K. Inglis, Abbey L. K. Hutton, Elizabeth A. Dinsdale, Robert A. Edwards
MotivationMicrobial communities found within the human gut have a strong influence on human health. Intestinal bacteria and viruses influence gastrointestinal diseases such as inflammatory bowel disease. Viruses infecting bacteria, known as bacteriop
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::80eb9eed5cbc9e34d3a5ac541d406800
https://doi.org/10.1101/2023.04.04.535632
https://doi.org/10.1101/2023.04.04.535632
Autor:
Bhavya Papudeshi, Alejandro A. Vega, Cole Souza, Sarah K. Giles, Vijini Mallawaarachchi, Michael J. Roach, Michelle An, Nicole Jacobson, Katelyn McNair, Maria Fernanda Mora, Karina Pastrana, Christopher Leigh, Clarice Cram, Will S. Plewa, Susanna R. Grigson, George Bouras, Przemysław Decewicz, Antoni Luque, Lindsay Droit, Scott A. Handley, Anca M. Segall, Elizabeth A. Dinsdale, Robert A. Edwards
Bacteroidota are the most common bacteria in the human gut and are responsible for degrading complex polysaccharides that would otherwise remain undigested. The abundance of Bacteroides in the gut is shaped by phages such as crAssphages that infect a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::9015130bc55b4fb4e7c8876f6df776fd
https://doi.org/10.1101/2023.03.05.531146
https://doi.org/10.1101/2023.03.05.531146
Autor:
Michael J. Roach, N. Tessa Pierce-Ward, Radoslaw Suchecki, Vijini Mallawaarachchi, Bhavya Papudeshi, Scott A. Handley, C. Titus Brown, Nathan S. Watson-Haigh, Robert A. Edwards
There is a growing trend for releasing bioinformatics workflows as command line applications. This is a good thing as workflow management systems add both functionality and reliability, while command line interfaces are convenient for end users. Deve
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::41c62783ef98e91983d016803481a56c
https://doi.org/10.31219/osf.io/8w5j3
https://doi.org/10.31219/osf.io/8w5j3