Zobrazeno 1 - 10 of 42 pro vyhledávání: '"Michael H. Holmes"'
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Akademický článek
Monitoring the long-term molecular epidemiology of the pneumococcus and detection of potential 'vaccine escape' strains.
Autor: Gagan A Pandya, M Catherine McEllistrem, Pratap Venepally, Michael H Holmes, Behnam Jarrahi, Ravi Sanka, Jia Liu, Svetlana A Karamycheva, Yun Bai, Robert D Fleischmann, Scott N Peterson
Publikováno v: PLoS ONE, Vol 6, Iss 1, p e15950 (2011)
While the pneumococcal protein conjugate vaccines reduce the incidence in invasive pneumococcal disease (IPD), serotype replacement remains a major concern. Thus, serotype-independent protection with vaccines targeting virulence genes, such as PspA,
Externí odkaz: https://doaj.org/article/2046453c5d3a48a29c9566a180718dd1
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2
Genome sequence of Aedes aegypti, a major arbovirus vector
Autor: Sergio Verjovski-Almeida, James E. Galagan, Ryan C. Kennedy, Zhiyong Xi, Jason R. Miller, Eric Eisenstadt, Kyanne R. Reidenbach, Robert V. Bruggner, Yu-Hui Rogers, Hadi Quesneville, Doreen Werner, Owen White, Alexander S. Raikhel, Mario Stanke, J. Spencer Johnston, Diane D. Lovin, Evgenia V. Kriventseva, Ian T. Paulsen, Kathryn S. Campbell, Norman H. Lee, Ewan Birney, Karyn Megy, Hean Koo, David Kulp, Shelby L. Bidwell, Jingsong Zhu, Philip Montgomery, Paolo Amedeo, Yongmei Zhao, Chinnappa D. Kodira, Javier Costas, Michael C. Schatz, Steven P. Sinkins, Claire M. Fraser-Liggett, Martin Shumway, Kurt LaButti, Akio Mori, Brendan J. Loftus, Manfred Grabherr, Eric O. Stinson, Frank H. Collins, Zhijian Jake Tu, Monique R. Coy, Matt Crawford, Janice P. Vanzee, William M. Gelbart, Joshua Orvis, Peter Arensburger, Chunhong Mao, Evgeny M. Zdobnov, Saul A. Kravitz, Suely Lopes Gomes, David DeCaprio, David G. Hogenkamp, Daniel Lawson, Dennis L. Knudson, David W. Severson, George Dimopoulos, Marcelo B. Soares, Sinéad B. O'Leary, Peter W. Atkinson, David M. Jaffe, Becky deBruyn, Martin Hammond, Ana L. T. O. Nascimento, Jim Biedler, Stefan Wyder, Jose M. C. Tubio, Bruce W. Birren, Catherine A. Hill, Chad Nusbaum, Eduardo Lee, Song Li, Susan E. Brown, Jennifer R. Wortman, James R. Hogan, Hamza El-Dorry, Qi Zhao, Linda Hannick, Carlos Frederico Martins Menck, Vishvanath Nene, Jonathan Crabtree, Steven L. Salzberg, Michael H. Holmes, Maria de Fatima Bonaldo, Quinghu Ren, Mihaela Pertea, Charles Roth, Evan Mauceli, Karin Eiglmeier, Horacio Naveira, Brian J. Haas, Qiandong Zeng, Neil F. Lobo, Jennifer R. Schneider
Publikováno v: Science
Science, American Association for the Advancement of Science, 2007, 316 (5832), pp.1718-23. 〈10.1126/science.1138878〉
Science, American Association for the Advancement of Science, 2007, 316 (5832), pp.1718-23. ⟨10.1126/science.1138878⟩
Science, 2007, 316 (5832), pp.1718-23. ⟨10.1126/science.1138878⟩
Science, Vol. 316, No 5832 (2007) pp. 1718-1723
We present a draft sequence of the genome of Aedes aegypti , the primary vector for yellow fever and dengue fever, which at ∼1376 million base pairs is about 5 times the size of the genome of the malaria vector Anopheles gambiae . Nearly 50% of the
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::701bca49fefccd61cb20d80a44096035
https://doi.org/10.1126/science.1138878
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3
DNA sequence quality trimming and vector removal
Autor: Michael H. Holmes, Hui-Hsien Chou
Publikováno v: Bioinformatics. 17:1093-1104
Motivation: Most sequence comparison methods assume that the data being compared are trustworthy, but this is not the case with raw DNA sequences obtained from automatic sequencing machines. Nevertheless, sequence comparisons need to be done on them
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::48d0b212724ed5451ea55b01ba032f75
https://doi.org/10.1093/bioinformatics/17.12.1093
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5
Comparative genome sequencing of an isogenic pair of USA800 clinical methicillin-resistant Staphylococcus aureus isolates obtained before and after daptomycin treatment failure
Autor: Ashley R. Balsam, David R. Boulware, Robert S. Daum, Susan Kline, Rebecca Ruf, Brett L. Gourley, Selina Jawahir, Susan Boyle-Vavra, Marcus B. Jones, Michael H. Holmes, Aaron S. DeVries, Scott N. Peterson
Publikováno v: Antimicrobial agents and chemotherapy. 55(5)
We describe here a clinical daptomycin treatment failure in a patient with recurrent methicillin-resistant Staphylococcus aureus (MRSA) bacteremia in whom daptomycin was administered after a failed empirical treatment course with vancomycin and piper
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::67a03df01d8d44052a48ea6d394be33d
https://pubmed.ncbi.nlm.nih.gov/21343446
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6
Whole genome single nucleotide polymorphism based phylogeny of Francisella tularensis and its application to the development of a strain typing assay
Autor: Jeannine M. Petersen, Svetlana Karamycheva, Michael H. Holmes, Mark J. Wolcott, Sonal Pradhan, Martin E. Schriefer, Marcus B. Jones, Gagan A Pandya, Scott N. Peterson, Robert D. Fleischmann, Claudia R. Molins
Publikováno v: BMC Microbiology
BMC Microbiology, Vol 9, Iss 1, p 213 (2009)
Background A low genetic diversity in Francisella tularensis has been documented. Current DNA based genotyping methods for typing F. tularensis offer a limited and varying degree of subspecies, clade and strain level discrimination power. Whole genom
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8a7e0e218ceb2e6685a138b6780c2200
https://doi.org/10.1186/1471-2180-9-213
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8
Identification, sequence, and expression of the gene encoding the second-largest subunit of the vaccinia virus DNA-dependent RNA polymerase
Autor: Nelson B. Cole, Bernard Moss, Patricia L. Earl, Michael H. Holmes, Bernard Y. Amegadzie, E V Jones
Publikováno v: Virology. 180:88-98
The gene, rpo 132, encoding the second-largest subunit of the vaccinia virus DNA-dependent RNA polymerase was identified and sequenced. Two complementary approaches, involving antiserum to purified vaccinia virus RNA polymerase, were used to locate t
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e0b33ae02ecf096f7010da25e65b7537
https://doi.org/10.1016/0042-6822(91)90012-z
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9
Monitoring the Long-Term Molecular Epidemiology of the Pneumococcus and Detection of Potential ‘Vaccine Escape’ Strains
Autor: Pratap Venepally, Scott N. Peterson, Gagan A Pandya, Robert D. Fleischmann, Yun Bai, Svetlana Karamycheva, Michael H. Holmes, M. Catherine McEllistrem, Jia Liu, Ravi Sanka, Behnam Jarrahi
Publikováno v: PLoS ONE
PLoS ONE, Vol 6, Iss 1, p e15950 (2011)
Background While the pneumococcal protein conjugate vaccines reduce the incidence in invasive pneumococcal disease (IPD), serotype replacement remains a major concern. Thus, serotype-independent protection with vaccines targeting virulence genes, suc
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c3ea129ac805ffad8eb5f803ac19ae17
https://doi.org/10.1371/journal.pone.0015950
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10
A bioinformatic filter for improved base-call accuracy and polymorphism detection using the Affymetrix GeneChip® whole-genome resequencing platform
Autor: Sirisha Sunkara, Michael H. Holmes, Scott N. Peterson, Andrew Sparks, Gagan A Pandya, Pratap Venepally, Yun Bai, Robert D. Fleischmann, Kathleen Verratti, Kelly Saeed, Behnam Jarrahi
Publikováno v: Nucleic Acids Research
DNA resequencing arrays enable rapid acquisition of high-quality sequence data. This technology represents a promising platform for rapid high-resolution genotyping of microorganisms. Traditional array-based resequencing methods have relied on the us
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9d0b9cc533c349e1f9b55bc7032b95ca
https://doi.org/10.1093/nar/gkm918
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