Zobrazeno 1 - 10
of 13
pro vyhledávání: '"Michael Baitaluk"'
Publikováno v:
PLoS ONE, Vol 7, Iss 12, p e52836 (2012)
Gene regulatory networks (GRNs) provide insight into the mechanisms of differential gene expression at a system level. However, the methods for inference, functional analysis and visualization of gene regulatory modules and GRNs require the user to c
Externí odkaz:
https://doaj.org/article/d1958f55d15f4075b7f01bbc74769a31
Autor:
Sergey Kozhenkov, Michael Baitaluk
Publikováno v:
Bioinformatics. 28:739-742
Motivation: Pathway diagrams from PubMed and World Wide Web (WWW) contain valuable highly curated information difficult to reach without tools specifically designed and customized for the biological semantics and high-content density of the images. T
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d66f251131e2ed53dda603b8d7f56829
https://doi.org/10.1093/bioinformatics/bts018
https://doi.org/10.1093/bioinformatics/bts018
Autor:
Michael Baitaluk, Julia Ponomarenko
Publikováno v:
Bioinformatics. 26:1651-1661
Motivation: Experimental and predicted data concerning gene transcriptional regulation are distributed among many heterogeneous sources. However, there are no resources to integrate these data automatically or to provide a ‘one-stop shop’ experie
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6d6807cd0827b1b3e64a43808f9131e3
https://doi.org/10.1093/bioinformatics/btq231
https://doi.org/10.1093/bioinformatics/btq231
Publikováno v:
Nucleic acids research, vol 44, iss D1
Nucleic Acids Research
Nucleic Acids Research
BindingDB, www.bindingdb.org, is a publicly accessible database of experimental protein-small molecule interaction data. Its collection of over a million data entries derives primarily from scientific articles and, increasingly, US patents. BindingDB
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6a3c14141f9fce34a1dc154e79ae9866
https://escholarship.org/uc/item/6nq2d6d7
https://escholarship.org/uc/item/6nq2d6d7
Publikováno v:
Nucleic Acids Research
Systems level investigation of genomic scale information requires the development of truly integrated databases dealing with heterogeneous data, which can be queried for simple properties of genes or other database objects as well as for complex netw
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0946278c3c6d46b09906a49cfa25e3e0
http://europepmc.org/articles/PMC1538788
http://europepmc.org/articles/PMC1538788
Publikováno v:
BMC Genomics, Vol 13, Iss 1, p 35 (2012)
BMC Genomics
Baitaluk, Michael; Kozhenkov, Sergey; Dubinina, Yulia; & Ponomarenko, Julia. (2012). IntegromeDB: an integrated system and biological search engine. BMC Genomics, 13(1), 35. doi: http://dx.doi.org/10.1186/1471-2164-13-35. Retrieved from: http://www.escholarship.org/uc/item/8vb7f19m
BMC Genomics
Baitaluk, Michael; Kozhenkov, Sergey; Dubinina, Yulia; & Ponomarenko, Julia. (2012). IntegromeDB: an integrated system and biological search engine. BMC Genomics, 13(1), 35. doi: http://dx.doi.org/10.1186/1471-2164-13-35. Retrieved from: http://www.escholarship.org/uc/item/8vb7f19m
Background With the growth of biological data in volume and heterogeneity, web search engines become key tools for researchers. However, general-purpose search engines are not specialized for the search of biological data. Description Here, we presen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::85294b842d1a13e0514117965e3a5ac4
http://www.biomedcentral.com/1471-2164/13/35
http://www.biomedcentral.com/1471-2164/13/35
Autor:
Animesh Ray, Yulia Dubinina, Sergey Kozhenkov, Michael Baitaluk, Amarnath Gupta, Julia Ponomarenko, Mayya Sedova
Publikováno v:
BMC Systems Biology, Vol 5, Iss 1, p 7 (2011)
BMC Systems Biology
BMC Systems Biology
Background Understanding of immune response mechanisms of pathogen-infected host requires multi-scale analysis of genome-wide data. Data integration methods have proved useful to the study of biological processes in model organisms, but their systema
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7672475e339cf0d2d201890a91d7b7d2
http://www.biomedcentral.com/1752-0509/5/7
http://www.biomedcentral.com/1752-0509/5/7
Autor:
Amarnath Gupta, Yulia Dubinina, Mayya Sedova, Sergey Kozhenkov, Michael Baitaluk, Julia Ponomarenko
Publikováno v:
BMC Bioinformatics, Vol 11, Iss 1, p 610 (2010)
BMC Bioinformatics
BMC Bioinformatics
Background A significant problem in the study of mechanisms of an organism's development is the elucidation of interrelated factors which are making an impact on the different levels of the organism, such as genes, biological molecules, cells, and ce
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::870b173e4153797e513efa94704dfbc7
http://www.biomedcentral.com/1471-2105/11/610
http://www.biomedcentral.com/1471-2105/11/610
Autor:
Michael, Baitaluk
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 569
A famous joke story that exhibits the traditionally awkward alliance between theory and experiment and showing the differences between experimental biologists and theoretical modelers is when a University sends a biologist, a mathematician, a physici
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::ad5d3c26d8093f06dda0b62558edf02f
https://pubmed.ncbi.nlm.nih.gov/19623486
https://pubmed.ncbi.nlm.nih.gov/19623486
Publikováno v:
Lecture Notes in Computer Science ISBN: 9783642111631
PReMI
PReMI
This paper proposes a navigational method for mining by collecting evidences from diverse data sources. Since the representation method and even semantics of data elements differ widely from one data source to the other, consolidation of data under a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::a62bf21cd11b89d3edb42d1f9d37f644
https://doi.org/10.1007/978-3-642-11164-8_26
https://doi.org/10.1007/978-3-642-11164-8_26