Introducing the novel Cytoscape app TimeNexus to analyze time-series data using temporal MultiLayer Networks (tMLNs)

Autor: Michaël Pierrelée, Ana Reynders, Fabrice Lopez, Aziz Moqrich, Laurent Tichit, Bianca H. Habermann

Publikováno v: Scientific Reports, Vol 11, Iss 1, Pp 1-17 (2021)

Abstract Integrating -omics data with biological networks such as protein–protein interaction networks is a popular and useful approach to interpret expression changes of genes in changing conditions, and to identify relevant cellular pathways, act

Externí odkaz: https://doaj.org/article/a290c56fc05d43d9bc816fdaed2e0bed

Introducing the novel Cytoscape app TimeNexus to analyze time-series data using temporal MultiLayer Networks (tMLNs)

Autor: Aziz Moqrich, Fabrice Lopez, Bianca Habermann, Michaël Pierrelée, Laurent Tichit, Ana Reynders

Publikováno v: Scientific Reports
Scientific Reports, Nature Publishing Group, 2021, 11 (1), ⟨10.1038/s41598-021-93128-5⟩
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-93128-5⟩
Scientific Reports, Vol 11, Iss 1, Pp 1-17 (2021)

Integrating -omics data with biological networks such as protein–protein interaction networks is a popular and useful approach to interpret expression changes of genes in changing conditions, and to identify relevant cellular pathways, active subne

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::de81f8494bb26236a98d99eb4a73c314
https://hal-amu.archives-ouvertes.fr/hal-03451381

Transcriptomic analysis of Chlorella sp. HS2 suggests the overflow of acetyl‐CoA and NADPH cofactor induces high lipid accumulation and halotolerance

Autor: Michaël Pierrelée, Hyeran Kim, Yong Keun Chang, Jin-Ho Yun, Dong-Yun Choi, Bongsoo Lee, Dae-Hyun Cho, Yong Jae Lee, Bianca Habermann, Hee-Sik Kim, Urim Kim, Jina Heo

Publikováno v: Food and Energy Security
Food and Energy Security, 2020, ⟨10.1002/fes3.267⟩
Food and Energy Security, 2021, ⟨10.1002/fes3.267⟩
Food and Energy Security, Vol 10, Iss 1, Pp n/a-n/a (2021)

International audience; Previously, we isolated Chlorella sp. HS2 (referred hereupon as HS2) from a local tidal rock pool and demonstrated its halotolerance and high biomass productivity under different salinity conditions. To further understand accl

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::29616d476973ada552fcdb6ef86971b5
https://hal-amu.archives-ouvertes.fr/hal-03138961/document