Zobrazeno 1 - 8
of 8
pro vyhledávání: '"Mian Umair Ahsan"'
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-21 (2024)
Abstract Oxford Nanopore sequencing can detect DNA methylations from ionic current signal of single molecules, offering a unique advantage over conventional methods. Additionally, adaptive sampling, a software-controlled enrichment method for targete
Externí odkaz:
https://doaj.org/article/5b1aae9388c743c29a522b650f037d70
Publikováno v:
Genes, Vol 14, Iss 10, p 1893 (2023)
Transposable elements, such as Long INterspersed Elements (LINEs), are DNA sequences that can replicate within genomes. LINEs replicate using an RNA intermediate followed by reverse transcription and are typically a few kilobases in length. LINE acti
Externí odkaz:
https://doaj.org/article/d534ce69266d4b76b00d4bef95826bed
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-33 (2021)
Abstract Long-read sequencing enables variant detection in genomic regions that are considered difficult-to-map by short-read sequencing. To fully exploit the benefits of longer reads, here we present a deep learning method NanoCaller, which detects
Externí odkaz:
https://doaj.org/article/37cda66ab91949598d6f80f1760fc76d
Autor:
Nathan D. Olson, Justin Wagner, Jennifer McDaniel, Sarah H. Stephens, Samuel T. Westreich, Anish G. Prasanna, Elaine Johanson, Emily Boja, Ezekiel J. Maier, Omar Serang, David Jáspez, José M. Lorenzo-Salazar, Adrián Muñoz-Barrera, Luis A. Rubio-Rodríguez, Carlos Flores, Konstantinos Kyriakidis, Andigoni Malousi, Kishwar Shafin, Trevor Pesout, Miten Jain, Benedict Paten, Pi-Chuan Chang, Alexey Kolesnikov, Maria Nattestad, Gunjan Baid, Sidharth Goel, Howard Yang, Andrew Carroll, Robert Eveleigh, Mathieu Bourgey, Guillaume Bourque, Gen Li, ChouXian Ma, LinQi Tang, YuanPing Du, ShaoWei Zhang, Jordi Morata, Raúl Tonda, Genís Parra, Jean-Rémi Trotta, Christian Brueffer, Sinem Demirkaya-Budak, Duygu Kabakci-Zorlu, Deniz Turgut, Özem Kalay, Gungor Budak, Kübra Narcı, Elif Arslan, Richard Brown, Ivan J. Johnson, Alexey Dolgoborodov, Vladimir Semenyuk, Amit Jain, H. Serhat Tetikol, Varun Jain, Mike Ruehle, Bryan Lajoie, Cooper Roddey, Severine Catreux, Rami Mehio, Mian Umair Ahsan, Qian Liu, Kai Wang, Sayed Mohammad Ebrahim Sahraeian, Li Tai Fang, Marghoob Mohiyuddin, Calvin Hung, Chirag Jain, Hanying Feng, Zhipan Li, Luoqi Chen, Fritz J. Sedlazeck, Justin M. Zook
Publikováno v:
Cell genomics. 2(5)
The precisionFDA Truth Challenge V2 aimed to assess the state of the art of variant calling in challenging genomic regions. Starting with FASTQs, 20 challenge participants applied their variant-calling pipelines and submitted 64 variant call sets for
Autor:
Calvin Hung, Jean-Rémi Trotta, Severine Catreux, LinQi Tang, Kübra Narcı, Alexey Kolesnikov, Qian Liu, Mian Umair Ahsan, Emily Boja, Samuel T. Westreich, Özem Kalay, Andrew Carroll, Sinem Demirkaya-Budak, Ivan E. Johnson, Richard J. C. Brown, Benedict Paten, Howard Yang, Amit Jain, Genís Parra, José M. Lorenzo-Salazar, Ezekiel J. Maier, Mathieu Bourgey, ChouXian Ma, Justin Wagner, Miten Jain, Alexey Dolgoborodov, Mike Ruehle, Konstantinos Kyriakidis, David Jáspez, Omar Serang, Vladimir Semenyuk, Fritz J. Sedlazeck, Jordi Morata, Marghoob Mohiyuddin, Christian Brueffer, Chirag Jain, Li Tai Fang, Robert Eveleigh, Gunjan Baid, Sidharth Goel, Raul Tonda, Gungor Budak, Sarah H. Stephens, Maria Nattestad, ShaoWei Zhang, Deniz Turgut, Hanying Feng, Elaine Johanson, Luoqi Chen, H. Serhat Tetikol, Rami Mehio, Adrián Muñoz-Barrera, Gen Li, Guillaume Bourque, Duygu Kabakci-Zorlu, YuanPing Du, Trevor Pesout, Zhipan Li, Varun Jain, Nathan D. Olson, Sayed Mohammad Ebrahim Sahraeian, Anish G. Prasanna, Kishwar Shafin, Jennifer McDaniel, Bryan R. Lajoie, Pi-Chuan Chang, Justin M. Zook, Kai Wang, Cooper Roddey, Andigoni Malousi, Luis A. Rubio-Rodríguez, Carlos Flores, Elif Arslan
SummaryThe precisionFDA Truth Challenge V2 aimed to assess the state-of-the-art of variant calling in difficult-to-map regions and the Major Histocompatibility Complex (MHC). Starting with FASTQ files, 20 challenge participants applied their variant
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::fa124f52f2cce6e8e82ee7f918a9a681
https://doi.org/10.1101/2020.11.13.380741
https://doi.org/10.1101/2020.11.13.380741
Publikováno v:
Genome Biology
Genome Biology, Vol 22, Iss 1, Pp 1-33 (2021)
Genome Biology, Vol 22, Iss 1, Pp 1-33 (2021)
Variants (SNPs/indels) detection from high-throughput sequencing data remains an important yet unresolved problem. Long-read sequencing enables variants detection in difficult-to-map genomic regions that short-read sequencing cannot reliably examine
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9bee8f3be3e60d7c216e51c8ed0c4162
https://doi.org/10.1101/2019.12.29.890418
https://doi.org/10.1101/2019.12.29.890418
Publikováno v:
FIT
Finding empty parking spaces is a common problem in densely populated areas. Drivers spend an unnecessarily large amount of time searching for the empty spots, because they do not have perfect knowledge about the available vacant spots. An effective
Publikováno v:
Neural Information Processing ISBN: 9783642344992
ICONIP (5)
ICONIP (5)
Parking is a huge problem in densely populated areas and drivers spend a significant amount of time finding a suitable place to park their cars. A system that could show drivers the nearest available space would result in enormous savings of time, fu
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b7f443d49f7d0fe754e658346b949760
https://doi.org/10.1007/978-3-642-34500-5_60
https://doi.org/10.1007/978-3-642-34500-5_60