Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in critical care patients.

Autor: El Chaar M; Faculty of Health Sciences, University of Balamand, Beirut, Lebanon., Khoury Y; Faculty of Health Sciences, University of Balamand, Beirut, Lebanon., Douglas GM; Department of Microbiology and Immunology, McGill University, Montréal, Québec, Canada., El Kazzi S; Faculty of Health Sciences, University of Balamand, Beirut, Lebanon., Jisr T; Clinical Laboratory Department, Makassed General Hospital, Beirut, Lebanon., Soussi S; Clinical Laboratory Department, Makassed General Hospital, Beirut, Lebanon., Merhi G; Department of Microbiology and Immunology, McGill University, Montréal, Québec, Canada., Moghnieh RA; Division of Infectious Diseases, Department of Internal Medicine, Lebanese American University Medical Center, Beirut, Lebanon., Shapiro BJ; Department of Microbiology and Immunology, McGill University, Montréal, Québec, Canada.

Publikováno v: Microbiology spectrum [Microbiol Spectr] 2024 Feb 06; Vol. 12 (2), pp. e0312823. Date of Electronic Publication: 2024 Jan 03.

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Replacement of the Alpha variant of SARS-CoV-2 by the Delta variant in Lebanon between April and June 2021.

Autor: Merhi G; Department of Natural Sciences, Lebanese American University, School of Arts and Sciences, Byblos, Lebanon., Trotter AJ; Quadram Institute Bioscience, Norwich Research Park, Norwich, Norfolk, UK., de Oliveira Martins L; Quadram Institute Bioscience, Norwich Research Park, Norwich, Norfolk, UK., Koweyes J; Department of Natural Sciences, Lebanese American University, School of Arts and Sciences, Byblos, Lebanon., Le-Viet T; Quadram Institute Bioscience, Norwich Research Park, Norwich, Norfolk, UK., Abou Naja H; Ministry of Public Health, Epidemiological Surveillance Program, Museum Square, Beirut, Lebanon., Al Buaini M; National Influenza Centre Research Laboratory, Rafic Hariri University Hospital, Beirut, Lebanon., Prosolek SJ; Quadram Institute Bioscience, Norwich Research Park, Norwich, Norfolk, UK., Alikhan NF; Quadram Institute Bioscience, Norwich Research Park, Norwich, Norfolk, UK., Lott M; Quadram Institute Bioscience, Norwich Research Park, Norwich, Norfolk, UK., Tohmeh T; Ministry of Public Health, Epidemiological Surveillance Program, Museum Square, Beirut, Lebanon., Badran B; Laboratory of Molecular Biology and Cancer Immunology, Faculty of Sciences, Lebanese University, Lebanon., Jupp OJ; University of East Anglia, Norwich, Norfolk, UK., Gardner S; University of East Anglia, Norwich, Norfolk, UK., Felgate MW; University of East Anglia, Norwich, Norfolk, UK., Makin KA; University of East Anglia, Norwich, Norfolk, UK., Wilkinson JM; University of East Anglia, Norwich, Norfolk, UK., Stanley R; Norfolk and Norwich University Hospital, Norwich, Norfolk, UK., Sesay AK; MRC Unit The Gambia at LHSTM, Fajara, Gambia., Webber MA; Quadram Institute Bioscience, Norwich Research Park, Norwich, Norfolk, UK.; University of East Anglia, Norwich, Norfolk, UK., Davidson RK; University of East Anglia, Norwich, Norfolk, UK., Ghosn N; Ministry of Public Health, Epidemiological Surveillance Program, Museum Square, Beirut, Lebanon., Pallen M; Quadram Institute Bioscience, Norwich Research Park, Norwich, Norfolk, UK.; University of East Anglia, Norwich, Norfolk, UK., Hasan H; Ministry of Public Health, Beirut, Lebanon., Page AJ; Quadram Institute Bioscience, Norwich Research Park, Norwich, Norfolk, UK., Tokajian S; Department of Natural Sciences, Lebanese American University, School of Arts and Sciences, Byblos, Lebanon.

Publikováno v: Microbial genomics [Microb Genom] 2022 Jul; Vol. 8 (7).

In silico evidence of beauvericin antiviral activity against SARS-CoV-2.

Autor: Al Khoury C; Department of Natural Sciences, School of Arts and Sciences, Lebanese American University, Byblos Campus, P.O. Box 36, Byblos, Lebanon. Electronic address: Charbel.alkhoury@lau.edu.lb., Bashir Z; Division of Genomics and Translational Biomedicine, College of Health and Life Sciences, Hamad Bin Khalifa University, P.O. Box 34110, Doha, Qatar., Tokajian S; Department of Natural Sciences, School of Arts and Sciences, Lebanese American University, Byblos Campus, P.O. Box 36, Byblos, Lebanon., Nemer N; Department of Agriculture and Food Engineering, Holy Spirit University of Kaslik, P.O. Box 446, Jounieh, Lebanon., Merhi G; Department of Natural Sciences, School of Arts and Sciences, Lebanese American University, Byblos Campus, P.O. Box 36, Byblos, Lebanon., Nemer G; Division of Genomics and Translational Biomedicine, College of Health and Life Sciences, Hamad Bin Khalifa University, P.O. Box 34110, Doha, Qatar; Department of Biochemistry and Molecular Genetics, Faculty of Medicine, American University of Beirut, P.O. Box 110236, Beirut, Lebanon. Electronic address: gnemer@hbku.edu.qa.

Publikováno v: Computers in biology and medicine [Comput Biol Med] 2022 Feb; Vol. 141, pp. 105171. Date of Electronic Publication: 2021 Dec 25.

Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch.

Autor: O'Toole Á; Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK., Hill V; Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK., Pybus OG; Department of Zoology, University of Oxford, Oxford, UK., Watts A; Li Ka Shing Knowledge Institute, St. Michael's Hospital, Toronto, Canada.; BlueDot, Toronto, Canada., Bogoch II; Department of Medicine, University of Toronto, Toronto, Canada.; Divisions of General Internal Medicine and Infectious Diseases, University Health Network, Toronto, Canada., Khan K; Li Ka Shing Knowledge Institute, St. Michael's Hospital, Toronto, Canada.; BlueDot, Toronto, Canada.; Department of Medicine, University of Toronto, Toronto, Canada., Messina JP; Department of Geography, University of Oxford, Oxford, UK., Tegally H; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa., Lessells RR; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa., Giandhari J; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa., Pillay S; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa., Tumedi KA; Botswana Institute for Technology Research and Innovation, Gaborone, Botswana., Nyepetsi G; National Health Laboratory, Gaborone, Botswana., Kebabonye M; Ministry of Health and Wellness, Gaborone, Botswana., Matsheka M; Botswana Institute for Technology Research and Innovation, Gaborone, Botswana., Mine M; National Health Laboratory, Gaborone, Botswana., Tokajian S; Department of Natural Sciences, Lebanese American University, Beirut, Lebanon., Hassan H; Faculty of Public Health, Lebanese University, Beirut, Lebanon., Salloum T; Department of Natural Sciences, Lebanese American University, Beirut, Lebanon., Merhi G; Department of Natural Sciences, Lebanese American University, Beirut, Lebanon., Koweyes J; Department of Natural Sciences, Lebanese American University, Beirut, Lebanon., Geoghegan JL; Department of Microbiology and Immunology, University of Otago, Dunedin, New Zealand.; Institute of Environmental Science and Research, Wellington, New Zealand., de Ligt J; Institute of Environmental Science and Research, Wellington, New Zealand., Ren X; Institute of Environmental Science and Research, Wellington, New Zealand., Storey M; Institute of Environmental Science and Research, Wellington, New Zealand., Freed NE; School of Natural and Computational Sciences, Massey University, Auckland, New Zealand., Pattabiraman C; Department of Neurovirology, National Institute of Mental Health and Neurosciences, Bengaluru, India., Prasad P; Department of Neurovirology, National Institute of Mental Health and Neurosciences, Bengaluru, India., Desai AS; Department of Neurovirology, National Institute of Mental Health and Neurosciences, Bengaluru, India., Vasanthapuram R; Department of Neurovirology, National Institute of Mental Health and Neurosciences, Bengaluru, India., Schulz TF; Institute of Virology, Hannover Medical School, Hannover, Germany., Steinbrück L; Institute of Virology, Hannover Medical School, Hannover, Germany., Stadler T; Department of Biosystems Science and Engineering, ETH Zürich, Zurich, Switzerland., Parisi A; Istituto Zooprofilattico sperimentale della Puglia e della Basilicata, Puglia, Italy., Bianco A; Istituto Zooprofilattico sperimentale della Puglia e della Basilicata, Puglia, Italy., García de Viedma D; Hospital General Universitario Gregorio Marañón; Instituto de Investigación Sanitaria Gregorio Marañón, Madrid, Spain.; CIBER Enfermedades Respiratorias CIBERES, Madrid, Spain., Buenestado-Serrano S; Hospital General Universitario Gregorio Marañón; Instituto de Investigación Sanitaria Gregorio Marañón, Madrid, Spain., Borges V; Bioinformatics Unit, Department of Infectious Diseases, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal., Isidro J; Bioinformatics Unit, Department of Infectious Diseases, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal., Duarte S; Innovation and Technology Unit, Department of Human Genetics, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal., Gomes JP; Bioinformatics Unit, Department of Infectious Diseases, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal., Zuckerman NS; Central Virology Laboratory, Israel Ministry of Health, Sheba Medical Center, Ramat Gan, Israel., Mandelboim M; Central Virology Laboratory, Israel Ministry of Health, Sheba Medical Center, Ramat Gan, Israel., Mor O; Central Virology Laboratory, Israel Ministry of Health, Sheba Medical Center, Ramat Gan, Israel., Seemann T; Microbiological Diagnostic Unit Public Health Laboratory, Department of Microbiology & Immunology, University of Melbourne at the Peter Doherty Institute for Infection & Immunity, Melbourne, Australia., Arnott A; New South Wales Health Pathology - Institute of Clinical Pathology and Medical Research, Sydney, Australia., Draper J; New South Wales Health Pathology - Institute of Clinical Pathology and Medical Research, Sydney, Australia., Gall M; New South Wales Health Pathology - Institute of Clinical Pathology and Medical Research, Sydney, Australia., Rawlinson W; New South Wales Health Pathology Randwick, Prince of Wales Hospital, Sydney, Australia., Deveson I; Kinghorn Centre for Clinical Genomics, Sydney, Australia., Schlebusch S; Queensland Reference Centre for Microbial and Public Health Genomics, Forensic and Scientific Services, Health Support Queensland, Queensland Health South Australia Pathology, Adelaide, Australia., McMahon J; Queensland Reference Centre for Microbial and Public Health Genomics, Forensic and Scientific Services, Health Support Queensland, Queensland Health South Australia Pathology, Adelaide, Australia., Leong L; South Australia Pathology, Adelaide, Australia., Lim CK; South Australia Pathology, Adelaide, Australia., Chironna M; Department of Biomedical Sciences and Human Oncology, University of Bari, Bari, Italy., Loconsole D; Department of Biomedical Sciences and Human Oncology, University of Bari, Bari, Italy., Bal A; Centre National de Référence des virus des infections respiratoires, Hospices Civils de Lyon, Lyon, France., Josset L; Centre National de Référence des virus des infections respiratoires, Hospices Civils de Lyon, Lyon, France., Holmes E; University of Sydney, Sydney, Australia., St George K; Wadsworth Center, New York State Department of Health, Albany, New York, USA., Lasek-Nesselquist E; Wadsworth Center, New York State Department of Health, Albany, New York, USA., Sikkema RS; ErasmusMC, Department of Viroscience, WHO collaborating centre for arbovirus and viral hemorrhagic fever Reference and Research, Rotterdam, The Netherlands., Oude Munnink B; ErasmusMC, Department of Viroscience, WHO collaborating centre for arbovirus and viral hemorrhagic fever Reference and Research, Rotterdam, The Netherlands., Koopmans M; ErasmusMC, Department of Viroscience, WHO collaborating centre for arbovirus and viral hemorrhagic fever Reference and Research, Rotterdam, The Netherlands., Brytting M; The Public Health Agency of Sweden, Department of Microbiology, Solna, Sweden., Sudha Rani V; Upgraded Department of Microbiology, Osmania Medical College, Hyderabad, Telangana, India., Pavani S; Upgraded Department of Microbiology, Osmania Medical College, Hyderabad, Telangana, India., Smura T; Department of Virology, University of Helsinki, Helsinki, Finland., Heim A; Institute of Virology, Hannover Medical School, Hannover, Germany., Kurkela S; HUS Diagnostic Center, HUSLAB, Clinical Microbiology, University of Helsinki and Helsinki University Hospital, Helsinki, Finland., Umair M; Department of Virology, National Institute of Health, Islamabad, Pakistan., Salman M; Department of Virology, National Institute of Health, Islamabad, Pakistan., Bartolini B; National Institute for Infectious Diseases 'L. Spallanzani', Rome, Italy., Rueca M; National Institute for Infectious Diseases 'L. Spallanzani', Rome, Italy., Drosten C; Institute for Virology, Charité Universitätsmedizin, Berlin, Germany., Wolff T; Robert Koch-Institut, , Head, Unit 17, Influenza and other Respiratory Viruses, Seestr. 10, Berlin, Germany., Silander O; School of Natural and Computational Sciences, Massey University, Auckland, New Zealand., Eggink D; WHO COVID-19 reference laboratory, Centre for Infectious Disease Control-National Institute for Public Health and the Environment, Bilthoven, The Netherlands., Reusken C; WHO COVID-19 reference laboratory, Centre for Infectious Disease Control-National Institute for Public Health and the Environment, Bilthoven, The Netherlands., Vennema H; WHO COVID-19 reference laboratory, Centre for Infectious Disease Control-National Institute for Public Health and the Environment, Bilthoven, The Netherlands., Park A; Division of Emerging Infectious Diseases, Bureau of Infectious Disease Diagnosis Control, Korea Disease Control and Prevention Agency, Cheongju-si, Chungcheongbuk-do, South Korea., Carrington C; University of the West Indies, St. Augustine, Trinidad and Tobago., Sahadeo N; University of the West Indies, St. Augustine, Trinidad and Tobago., Carr M; National Virus Reference Laboratory, University College Dublin, Dublin, Ireland., Gonzalez G; National Virus Reference Laboratory, University College Dublin, Dublin, Ireland., de Oliveira T; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa., Faria N; Department of Zoology, University of Oxford, Oxford, UK.; Imperial College London, London, UK., Rambaut A; Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK., Kraemer MUG; Department of Zoology, University of Oxford, Oxford, UK.

Publikováno v: Wellcome open research [Wellcome Open Res] 2021 Sep 17; Vol. 6, pp. 121. Date of Electronic Publication: 2021 Sep 17 (Print Publication: 2021).