Niche partitioning of a pathogenic microbiome driven by chemical gradients

Autor: Quinn, RA, Comstock, W, Zhang, T, Morton, JT, da Silva, R, Tran, A, Aksenov, A, Nothias, L-F, Wangpraseurt, D, Melnik, AV, Ackermann, G, Conrad, D, Klapper, I, Knight, R, Dorrestein, PC

Publikováno v: Science advances, vol 4, iss 9
Quinn, RA; Comstock, W; Zhang, T; Morton, JT; da Silva, R; Tran, A; et al.(2018). Niche partitioning of a pathogenic microbiome driven by chemical gradients.. Science advances, 4(9), eaau1908. doi: 10.1126/sciadv.aau1908. UC San Diego: Retrieved from: http://www.escholarship.org/uc/item/1rp5g6sz

© 2018 The Authors, some rights reserved. Environmental microbial communities are stratified by chemical gradients that shape the structure and function of these systems. Similar chemical gradients exist in the human body, but how they influence the

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::39ab8213a70e6490dfa665c0855eb042
https://escholarship.org/uc/item/1rp5g6sz

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Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics.

Autor: Bittremieux W; Department of Computer Science, University of Antwerp, 2020, Antwerpen, Belgium. wout.bittremieux@uantwerpen.be., Avalon NE; Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, 92093, USA., Thomas SP; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, 92093, USA.; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, 92093, USA., Kakhkhorov SA; Laboratory of Physical and Chemical Methods of Research, Center for Advanced Technologies, Tashkent, 100174, Uzbekistan.; Department of Food Science, Faculty of Science, University of Copenhagen, Rolighedsvej 26, 1958, Frederiksberg C, Denmark., Aksenov AA; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, 92093, USA.; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, 92093, USA.; Department of Chemistry, University of Connecticut, Storrs, CT, 06269, USA.; Arome Science inc., Farmington, CT, 06032, USA., Gomes PWP; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, 92093, USA.; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, 92093, USA., Aceves CM; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, 92037, USA., Caraballo-Rodríguez AM; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, 92093, USA.; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, 92093, USA., Gauglitz JM; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, 92093, USA.; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, 92093, USA., Gerwick WH; Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, 92093, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, 92093, USA., Huan T; Department of Chemistry, University of British Columbia, Vancouver, BC, V6T 1Z1, Canada., Jarmusch AK; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, 92093, USA.; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, 92093, USA.; Immunity, Inflammation, and Disease Laboratory, Division of Intramural Research, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, Durham, NC, 27709, USA., Kaddurah-Daouk RF; Department of Psychiatry and Behavioral Sciences, Duke University School of Medicine, Durham, NC, 27701, USA.; Department of Medicine, Duke University, Durham, NC, 27710, USA.; Duke Institute of Brain Sciences, Duke University, Durham, NC, 27710, USA., Kang KB; College of Pharmacy and Research Institute of Pharmaceutical Sciences, Sookmyung Women's University, Seoul, 04310, Korea., Kim HW; College of Pharmacy and Integrated Research Institute for Drug Development, Dongguk University, Goyang, 10326, Korea., Kondić T; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, L-4367, Belvaux, Luxembourg., Mannochio-Russo H; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, 92093, USA.; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, 92093, USA.; Department of Biochemistry and Organic Chemistry, Institute of Chemistry, São Paulo State University, Araraquara, 14800-901, Brazil., Meehan MJ; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, 92093, USA.; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, 92093, USA., Melnik AV; Department of Chemistry, University of Connecticut, Storrs, CT, 06269, USA.; Arome Science inc., Farmington, CT, 06032, USA., Nothias LF; Université Côte d'Azur, CNRS, ICN, Nice, France.; Interdisciplinary Institute for Artificial Intelligence (3iA) Côte d'Azur, Nice, France., O'Donovan C; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK., Panitchpakdi M; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, 92093, USA.; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, 92093, USA., Petras D; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, 92093, USA.; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, 92093, USA.; Interfaculty Institute of Microbiology and Infection Medicine, University of Tuebingen, 72076, Tuebingen, Germany.; Department of Biochemistry, University of California Riverside, Riverside, CA, 92507, USA., Schmid R; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, 92093, USA.; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, 92093, USA., Schymanski EL; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, L-4367, Belvaux, Luxembourg., van der Hooft JJJ; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, 92093, USA.; Bioinformatics Group, Wageningen University & Research, 6708 PB, Wageningen, The Netherlands., Weldon KC; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, 92093, USA.; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, 92093, USA., Yang H; Laboratory of Natural Products Chemistry, College of Pharmacy, Kangwon National University, Chuncheon, 24341, Korea., Xing S; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, 92093, USA.; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, 92093, USA.; Department of Chemistry, University of British Columbia, Vancouver, BC, V6T 1Z1, Canada., Zemlin J; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, 92093, USA.; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, 92093, USA., Wang M; Department of Computer Science and Engineering, University of California Riverside, Riverside, CA, 92507, USA., Dorrestein PC; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, 92093, USA. pdorrestein@health.ucsd.edu.; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, 92093, USA. pdorrestein@health.ucsd.edu.

Publikováno v: Nature communications [Nat Commun] 2023 Dec 20; Vol. 14 (1), pp. 8488. Date of Electronic Publication: 2023 Dec 20.

Bioluminescent eddies of the World Ocean.

Autor: Piontkovski SA; Institute of Prospective Research, Sevastopol State University, Sevastopol, Russia., Melnik AV; Plankton Department, A.O.Kovalevsky Institute of Biology of the Southern Seas, Sevastopol, Russia., Serikova IM; Plankton Department, A.O.Kovalevsky Institute of Biology of the Southern Seas, Sevastopol, Russia., Minsky IA; Plankton Department, A.O.Kovalevsky Institute of Biology of the Southern Seas, Sevastopol, Russia., Zhuk VF; Plankton Department, A.O.Kovalevsky Institute of Biology of the Southern Seas, Sevastopol, Russia.

Publikováno v: Luminescence : the journal of biological and chemical luminescence [Luminescence] 2023 Apr; Vol. 38 (4), pp. 505-512. Date of Electronic Publication: 2023 Mar 27.