Detection of Known and Novel Small Proteins in Pseudomonas stutzeri Using a Combination of Bottom-Up and Digest-Free Proteomics and Proteogenomics.

Autor: Meier-Credo J; Proteomics, Max Planck Institute of Biophysics, 60438 Frankfurt am Main, Germany., Heiniger B; Molecular Ecology, Agroscope & SIB Swiss Institute of Bioinformatics, 8046 Zürich, Switzerland., Schori C; Molecular Ecology, Agroscope & SIB Swiss Institute of Bioinformatics, 8046 Zürich, Switzerland., Rupprecht F; Proteomics, Max Planck Institute for Brain Research, 60438 Frankfurt am Main, Germany., Michel H; Department of Molecular Membrane Biology, Max Planck Institute of Biophysics, 60438 Frankfurt am Main, Germany., Ahrens CH; Molecular Ecology, Agroscope & SIB Swiss Institute of Bioinformatics, 8046 Zürich, Switzerland., Langer JD; Proteomics, Max Planck Institute of Biophysics, 60438 Frankfurt am Main, Germany.; Proteomics, Max Planck Institute for Brain Research, 60438 Frankfurt am Main, Germany.

Publikováno v: Analytical chemistry [Anal Chem] 2023 Aug 15; Vol. 95 (32), pp. 11892-11900. Date of Electronic Publication: 2023 Aug 03.

Essential protein P116 extracts cholesterol and other indispensable lipids for Mycoplasmas.

Autor: Sprankel L; Buchmann Institute for Molecular Life Sciences and Institute of Biophysics, Goethe University Frankfurt, Frankfurt, Germany., Vizarraga D; Instituto de Biología Molecular de Barcelona (IBMB-CSIC), Parc Científic de Barcelona, Barcelona, Spain., Martín J; Instituto de Biología Molecular de Barcelona (IBMB-CSIC), Parc Científic de Barcelona, Barcelona, Spain., Manger S; Buchmann Institute for Molecular Life Sciences and Institute of Biophysics, Goethe University Frankfurt, Frankfurt, Germany., Meier-Credo J; Proteomics, Max Planck Institute of Biophysics, Frankfurt, Germany., Marcos M; Institut de Biotecnologia i Biomedicina and Departament de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, Spain., Julve J; Institut de Recerca de l'Hospital de la Santa Creu i Sant Pau and CIBER de Diabetes y Enfermedades Metabólicas Asociadas (CIBERDEM), Barcelona, Spain., Rotllan N; Institut de Recerca de l'Hospital de la Santa Creu i Sant Pau and CIBER de Diabetes y Enfermedades Metabólicas Asociadas (CIBERDEM), Barcelona, Spain., Scheffer MP; Buchmann Institute for Molecular Life Sciences and Institute of Biophysics, Goethe University Frankfurt, Frankfurt, Germany., Escolà-Gil JC; Institut de Recerca de l'Hospital de la Santa Creu i Sant Pau and CIBER de Diabetes y Enfermedades Metabólicas Asociadas (CIBERDEM), Barcelona, Spain., Langer JD; Proteomics, Max Planck Institute of Biophysics, Frankfurt, Germany.; Proteomics, Max Planck Institute for Brain Research, Frankfurt, Germany., Piñol J; Institut de Biotecnologia i Biomedicina and Departament de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, Spain., Fita I; Instituto de Biología Molecular de Barcelona (IBMB-CSIC), Parc Científic de Barcelona, Barcelona, Spain. ifrcri@ibmb.csic.es., Frangakis AS; Buchmann Institute for Molecular Life Sciences and Institute of Biophysics, Goethe University Frankfurt, Frankfurt, Germany. achilleas.frangakis@biophysik.org.

Publikováno v: Nature structural & molecular biology [Nat Struct Mol Biol] 2023 Mar; Vol. 30 (3), pp. 321-329. Date of Electronic Publication: 2023 Feb 13.

Top-Down Identification and Sequence Analysis of Small Membrane Proteins Using MALDI-MS/MS.

Autor: Meier-Credo J; Proteomics, Max Planck Institute of Biophysics, Max-von-Laue-Strasse 3, 60438 Frankfurt am Main, Germany.; Proteomics, Max Planck Institute for Brain Research, Max-von-Laue-Strasse 4, 60438 Frankfurt am Main, Germany., Preiss L; Structural Biology, Max Planck Institute of Biophysics, Max-von-Laue-Strasse 3, 60438 Frankfurt am Main, Germany., Wüllenweber I; Proteomics, Max Planck Institute of Biophysics, Max-von-Laue-Strasse 3, 60438 Frankfurt am Main, Germany.; Proteomics, Max Planck Institute for Brain Research, Max-von-Laue-Strasse 4, 60438 Frankfurt am Main, Germany., Resemann A; Bruker Daltonics GmbH & Co. KG, Fahrenheitstrasse 4, 28359 Bremen, Germany., Nordmann C; Bruker Daltonics GmbH & Co. KG, Fahrenheitstrasse 4, 28359 Bremen, Germany., Zabret J; Department of Plant Biochemistry, Ruhr University Bochum, 44780 Bochum, Germany., Suckau D; Bruker Daltonics GmbH & Co. KG, Fahrenheitstrasse 4, 28359 Bremen, Germany., Michel H; Molecular Membrane Biology, Max Planck Institute of Biophysics, Max-von-Laue-Strasse 3, 60438 Frankfurt am Main, Germany., Nowaczyk MM; Department of Plant Biochemistry, Ruhr University Bochum, 44780 Bochum, Germany., Meier T; Department of Life Sciences, Imperial College London, Exhibition Road, SW7 2AZ London, United Kingdom., Langer JD; Proteomics, Max Planck Institute of Biophysics, Max-von-Laue-Strasse 3, 60438 Frankfurt am Main, Germany.; Proteomics, Max Planck Institute for Brain Research, Max-von-Laue-Strasse 4, 60438 Frankfurt am Main, Germany.

Publikováno v: Journal of the American Society for Mass Spectrometry [J Am Soc Mass Spectrom] 2022 Jul 06; Vol. 33 (7), pp. 1293-1302. Date of Electronic Publication: 2022 Jun 27.

Structural insights into photosystem II assembly.

Autor: Zabret J; Department of Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum, Germany., Bohn S; Department of Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried, Germany., Schuller SK; Department of Structural Cell Biology, Max Planck Institute of Biochemistry, Martinsried, Germany.; CryoEM of Molecular Machines, SYNMIKRO Research Center and Department of Chemistry, Philipps University of Marburg, Marburg, Germany., Arnolds O; Biomolecular Spectroscopy and RUBiospek|NMR, Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Bochum, Germany., Möller M; Department of Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum, Germany., Meier-Credo J; Proteomics, Max Planck Institute of Biophysics, Frankfurt, Germany., Liauw P; Department of Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum, Germany., Chan A; NIH Center for Macromolecular Modeling and Bioinformatics, Beckman Institute for Advanced Science and Technology, Department of Biochemistry, and Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA., Tajkhorshid E; NIH Center for Macromolecular Modeling and Bioinformatics, Beckman Institute for Advanced Science and Technology, Department of Biochemistry, and Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA., Langer JD; Proteomics, Max Planck Institute of Biophysics, Frankfurt, Germany.; Proteomics, Max Planck Institute for Brain Research, Frankfurt, Germany., Stoll R; Biomolecular Spectroscopy and RUBiospek|NMR, Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Bochum, Germany., Krieger-Liszkay A; Institute for Integrative Biology of the Cell (I2BC), Université Paris-Saclay, CEA, CNRS, Gif-sur-Yvette, France., Engel BD; Department of Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried, Germany.; Helmholtz Pioneer Campus, Helmholtz Zentrum München, Neuherberg, Germany.; Department of Chemistry, Technical University of Munich, Garching, Germany., Rudack T; Biospectroscopy, Center for Protein Diagnostics (ProDi), Ruhr University Bochum, Bochum, Germany. till.rudack@rub.de.; Department of Biophysics, Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum, Germany. till.rudack@rub.de., Schuller JM; Department of Structural Cell Biology, Max Planck Institute of Biochemistry, Martinsried, Germany. jan.schuller@synmikro.uni-marburg.de.; CryoEM of Molecular Machines, SYNMIKRO Research Center and Department of Chemistry, Philipps University of Marburg, Marburg, Germany. jan.schuller@synmikro.uni-marburg.de., Nowaczyk MM; Department of Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum, Germany. marc.m.nowaczyk@rub.de.

Publikováno v: Nature plants [Nat Plants] 2021 Apr; Vol. 7 (4), pp. 524-538. Date of Electronic Publication: 2021 Apr 12.

Site-Specific Detection of Arginine Methylation in Highly Repetitive Protein Motifs of Low Sequence Complexity by NMR.

Autor: Altincekic N; Institute for Organic Chemistry and Chemical Biology, Goethe University Frankfurt am Main, Frankfurt 60438, Germany.; Center of Biomolecular Magnetic Resonance (BMRZ), Goethe University Frankfurt am Main, Frankfurt 60438, Germany., Löhr F; Center of Biomolecular Magnetic Resonance (BMRZ), Goethe University Frankfurt am Main, Frankfurt 60438, Germany.; Institute of Biophysical Chemistry, Goethe University Frankfurt am Main, Frankfurt 60438, Germany., Meier-Credo J; Max Planck Institute of Biophysics, Frankfurt am Main, 60438, Germany., Langer JD; Max Planck Institute of Biophysics, Frankfurt am Main, 60438, Germany., Hengesbach M; Institute for Organic Chemistry and Chemical Biology, Goethe University Frankfurt am Main, Frankfurt 60438, Germany., Richter C; Institute for Organic Chemistry and Chemical Biology, Goethe University Frankfurt am Main, Frankfurt 60438, Germany.; Center of Biomolecular Magnetic Resonance (BMRZ), Goethe University Frankfurt am Main, Frankfurt 60438, Germany., Schwalbe H; Institute for Organic Chemistry and Chemical Biology, Goethe University Frankfurt am Main, Frankfurt 60438, Germany.; Center of Biomolecular Magnetic Resonance (BMRZ), Goethe University Frankfurt am Main, Frankfurt 60438, Germany.

Publikováno v: Journal of the American Chemical Society [J Am Chem Soc] 2020 Apr 22; Vol. 142 (16), pp. 7647-7654. Date of Electronic Publication: 2020 Apr 14.