Tumor-Promoted Changes in Pediatric Brain Histology Can Be Distinguished from Normal Parenchyma by Desorption Electrospray Ionization Mass Spectrometry Imaging.

Autor: Seidinger AL; Boldrini Children's Center, Campinas 13083-210, Brazil.; Graduate Program in Genetics and Molecular Biology, Institute of Biology, State University of Campinas, Campinas 13083-970, Brazil., Silva FLT; Boldrini Children's Center, Campinas 13083-210, Brazil.; Graduate Program in Genetics and Molecular Biology, Institute of Biology, State University of Campinas, Campinas 13083-970, Brazil., Euzébio MF; Boldrini Children's Center, Campinas 13083-210, Brazil.; Graduate Program in Genetics and Molecular Biology, Institute of Biology, State University of Campinas, Campinas 13083-970, Brazil., Krieger AC; Department of Chemistry, The University of Texas at Austin, Austin, TX 78712, USA., Meidanis J; Boldrini Children's Center, Campinas 13083-210, Brazil.; Institute of Computing, State University of Campinas, Campinas 13083-852, Brazil., Gutierrez JM; MS4Life Laboratory of Mass Spectrometry, Health Sciences Postgraduate Program, São Francisco University, Bragança Paulista 12916-900, Brazil., Bezerra TMS; Boldrini Children's Center, Campinas 13083-210, Brazil.; Faculty of Medical Sciences, State University of Campinas, Campinas 13083-887, Brazil., Queiroz L; Boldrini Children's Center, Campinas 13083-210, Brazil.; Faculty of Medical Sciences, State University of Campinas, Campinas 13083-887, Brazil., Silva AAR; MS4Life Laboratory of Mass Spectrometry, Health Sciences Postgraduate Program, São Francisco University, Bragança Paulista 12916-900, Brazil., Hoffmann IL; Boldrini Children's Center, Campinas 13083-210, Brazil., Daiggi CMM; Boldrini Children's Center, Campinas 13083-210, Brazil., Tedeschi H; Boldrini Children's Center, Campinas 13083-210, Brazil.; Department of Neurology, Division of Neurosurgery, State University of Campinas, Campinas 13083-888, Brazil., Eberlin MN; MackMass Laboratory for Mass Spectrometry, School of Engineering, PPGEMN & Mackenzie Institute of Research in Graphene and Nanotechnologies, Mackenzie Presbyterian University, São Paulo 01302-907, Brazil., Eberlin LS; Department of Surgery, Baylor College of Medicine, Houston, TX 77030, USA., Yunes JA; Boldrini Children's Center, Campinas 13083-210, Brazil.; Graduate Program in Genetics and Molecular Biology, Institute of Biology, State University of Campinas, Campinas 13083-970, Brazil., Porcari AM; MS4Life Laboratory of Mass Spectrometry, Health Sciences Postgraduate Program, São Francisco University, Bragança Paulista 12916-900, Brazil., Cardinalli IA; Boldrini Children's Center, Campinas 13083-210, Brazil.

Publikováno v: Biomedicines [Biomedicines] 2024 Nov 13; Vol. 12 (11). Date of Electronic Publication: 2024 Nov 13.

The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars.

Autor: Salojärvi J; School of Biological Sciences, Nanyang Technological University, Singapore, Singapore. jarkko@ntu.edu.sg.; Organismal and Evolutionary Biology Research Programme, University of Helsinki, Helsinki, Finland. jarkko@ntu.edu.sg.; Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, Singapore. jarkko@ntu.edu.sg., Rambani A; Boyce Thompson Institute, Cornell University, Ithaca, NY, USA., Yu Z; Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario, Canada., Guyot R; Institut de Recherche pour le Développement (IRD), Université de Montpellier, Montpellier, France.; Department of Electronics and Automation, Universidad Autónoma de Manizales, Manizales, Colombia., Strickler S; Boyce Thompson Institute, Cornell University, Ithaca, NY, USA., Lepelley M; Société des Produits Nestlé SA, Nestlé Research, Tours, France., Wang C; Organismal and Evolutionary Biology Research Programme, University of Helsinki, Helsinki, Finland., Rajaraman S; Organismal and Evolutionary Biology Research Programme, University of Helsinki, Helsinki, Finland., Rastas P; Institute of Biotechnology, University of Helsinki, Helsinki, Finland., Zheng C; Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario, Canada., Muñoz DS; Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario, Canada., Meidanis J; Institute of Computing, University of Campinas, Campinas, Brazil., Paschoal AR; Department of Computer Science, The Federal University of Technology - Paraná (UTFPR), Cornélio Procópio, Brazil., Bawin Y; Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Melle, Belgium., Krabbenhoft TJ; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA., Wang ZQ; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA., Fleck SJ; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA., Aussel R; Société des Produits Nestlé SA, Nestlé Research, Tours, France.; Centre d'Immunologie de Marseille-Luminy, Aix Marseille Université, Marseille, France., Bellanger L; Société des Produits Nestlé SA, Nestlé Research, Tours, France., Charpagne A; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Fournier C; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Kassam M; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Lefebvre G; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Métairon S; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Moine D; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Rigoreau M; Société des Produits Nestlé SA, Nestlé Research, Tours, France., Stolte J; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Hamon P; Institut de Recherche pour le Développement (IRD), Université de Montpellier, Montpellier, France., Couturon E; Institut de Recherche pour le Développement (IRD), Université de Montpellier, Montpellier, France., Tranchant-Dubreuil C; Institut de Recherche pour le Développement (IRD), Université de Montpellier, Montpellier, France., Mukherjee M; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA., Lan T; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA., Engelhardt J; Department of Computer Science, University of Leipzig, Leipzig, Germany., Stadler P; Department of Computer Science, University of Leipzig, Leipzig, Germany.; Interdisciplinary Center for Bioinformatics, University of Leipzig, Leipzig, Germany., Correia De Lemos SM; Group of Genomics and Transcriptomes in Plants, São Paulo State University, UNESP, Rio Claro, Brazil., Suzuki SI; Centro de Ciências Agrárias, Universidade Estadual de Londrina, Londrina, Brazil., Sumirat U; Indonesian Coffee and Cocoa Research Institute (ICCRI), Jember, Indonesia., Wai CM; University of Illinois at Urbana-Champaign, Urbana, IL, USA., Dauchot N; Research Unit in Plant Cellular and Molecular Biology, University of Namur, Namur, Belgium., Orozco-Arias S; Department of Electronics and Automation, Universidad Autónoma de Manizales, Manizales, Colombia., Garavito A; Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas y Naturales, Universidad de Caldas, Manizales, Colombia., Kiwuka C; National Agricultural Research Organization (NARO), Entebbe, Uganda., Musoli P; National Agricultural Research Organization (NARO), Entebbe, Uganda., Nalukenge A; National Agricultural Research Organization (NARO), Entebbe, Uganda., Guichoux E; Biodiversité Gènes & Communautés, INRA, Bordeaux, France., Reinout H; Hortus Botanicus Amsterdam, Amsterdam, the Netherlands., Smit M; Hortus Botanicus Amsterdam, Amsterdam, the Netherlands., Carretero-Paulet L; Departamento de Biología y Geología, Universidad de Almería, Almería, Spain., Filho OG; Instituto Agronômico (IAC) Centro de Café 'Alcides Carvalho', Fazenda Santa Elisa, Campinas, Brazil., Braghini MT; Instituto Agronômico (IAC) Centro de Café 'Alcides Carvalho', Fazenda Santa Elisa, Campinas, Brazil., Padilha L; Embrapa Café/Instituto Agronômico (IAC) Centro de Café 'Alcides Carvalho', Fazenda Santa Elisa, Campinas, Brazil., Sera GH; Instituto de Desenvolvimento Rural do Paraná- IAPAR, Londrina, Brazil., Ruttink T; Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Melle, Belgium.; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium., Henry R; Queensland Alliance for Agriculture and Food Innovation, University of Queensland, Brisbane, Queensland, Australia., Marraccini P; CIRAD - UMR DIADE (IRD-CIRAD-Université de Montpellier) BP 64501, Montpellier, France., Van de Peer Y; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.; Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa.; College of Horticulture, Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University, Nanjing, China.; Center for Plant Systems Biology, VIB, Ghent, Belgium., Andrade A; Embrapa Café/Inovacafé Laboratory of Molecular Genetics Campus da UFLA-MG, Lavras, Brazil., Domingues D; Group of Genomics and Transcriptomes in Plants, São Paulo State University, UNESP, Rio Claro, Brazil., Giuliano G; Italian National Agency for New Technologies, Energy and Sustainable Economic Development, ENEA Casaccia Research Center, Rome, Italy., Mueller L; Boyce Thompson Institute, Cornell University, Ithaca, NY, USA., Pereira LF; Embrapa Café/Lab. Biotecnologia, Área de Melhoramento Genético, Londrina, Brazil., Plaisance S; VIB Nucleomics Core, Leuven, Belgium., Poncet V; Institut de Recherche pour le Développement (IRD), Université de Montpellier, Montpellier, France., Rombauts S; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.; Center for Plant Systems Biology, VIB, Ghent, Belgium., Sankoff D; Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario, Canada., Albert VA; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA. vaalbert@buffalo.edu., Crouzillat D; Société des Produits Nestlé SA, Nestlé Research, Tours, France. dcrouzillat@gmail.com., de Kochko A; Institut de Recherche pour le Développement (IRD), Université de Montpellier, Montpellier, France. alexandre.dekochko@gmail.com., Descombes P; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland. patrick.descombes@rd.nestle.com.

Publikováno v: Nature genetics [Nat Genet] 2024 Apr; Vol. 56 (4), pp. 721-731. Date of Electronic Publication: 2024 Apr 15.

Vidjil add-on for MRD quantification of samples processed using the EuroClonality-NGS protocol.

Autor: Giusti GNN; Centro de Pesquisa Boldrini Centro Infantil Boldrini Campinas São Paulo Brazil.; Instituto de Biologia Universidade Estadual de Campinas Campinas São Paulo Brazil., Ribeiro AV; Instituto de Matemática Estatística e Computação Científica Universidade Estadual de Campinas Campinas São Paulo Brazil., Jotta PY; Centro de Pesquisa Boldrini Centro Infantil Boldrini Campinas São Paulo Brazil., Thonier F; Centre Inria Université de Rennes Rennes France., Yunes JA; Centro de Pesquisa Boldrini Centro Infantil Boldrini Campinas São Paulo Brazil.; Faculdade de Ciências Médicas Universidade Estadual de Campinas Campinas São Paulo Brazil., Meidanis J; Instituto de Computação Universidade Estadual de Campinas Campinas São Paulo Brazil.

Publikováno v: EJHaem [EJHaem] 2023 Jul 10; Vol. 4 (3), pp. 770-774. Date of Electronic Publication: 2023 Jul 10 (Print Publication: 2023).

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Test trial of spike-in immunoglobulin heavy-chain (IGH) controls for next generation sequencing quantification of minimal residual disease in acute lymphoblastic leukaemia.

Autor: Giusti GNN; Laboratório de Biologia Molecular, Centro Infantil Boldrini, Campinas, São Paulo, Brazil.; Graduate Program in Genetics and Molecular Biology, University of Campinas, Campinas, São Paulo, Brazil., Jotta PY; Laboratório de Biologia Molecular, Centro Infantil Boldrini, Campinas, São Paulo, Brazil., Lopes CO; Laboratório de Biologia Molecular, Centro Infantil Boldrini, Campinas, São Paulo, Brazil., Ganazza MA; Laboratório de Biologia Molecular, Centro Infantil Boldrini, Campinas, São Paulo, Brazil., de Azevedo AC; Laboratório de Biologia Molecular, Centro Infantil Boldrini, Campinas, São Paulo, Brazil., Brandalise SR; Laboratório de Biologia Molecular, Centro Infantil Boldrini, Campinas, São Paulo, Brazil., Meidanis J; Laboratório de Biologia Molecular, Centro Infantil Boldrini, Campinas, São Paulo, Brazil.; Institute of Computing, University of Campinas, Campinas, São Paulo, Brazil., Yunes JA; Laboratório de Biologia Molecular, Centro Infantil Boldrini, Campinas, São Paulo, Brazil.; Genetics Department, Faculty of Medical Sciences, University of Campinas, Campinas, São Paulo, Brazil.

Publikováno v: British journal of haematology [Br J Haematol] 2020 May; Vol. 189 (4), pp. e150-e154. Date of Electronic Publication: 2020 Mar 18.