Zobrazeno 1 - 10
of 18
pro vyhledávání: '"Meenakshi S Kagda"'
Publikováno v:
PLoS Biology, Vol 18, Iss 12, p e3000689 (2020)
Coevolution between transposable elements (TEs) and their hosts can be antagonistic, where TEs evolve to avoid silencing and the host responds by reestablishing TE suppression, or mutualistic, where TEs are co-opted to benefit their host. The TART-A
Externí odkaz:
https://doaj.org/article/ee5cf49cb66647c29b3621b92ae65864
Publikováno v:
PLoS Pathogens, Vol 15, Iss 4, p e1007729 (2019)
The use of host nutrients to support pathogen growth is central to disease. We addressed the relationship between metabolism and trophic behavior by comparing metabolic gene expression during potato tuber colonization by two oomycetes, the hemibiotro
Externí odkaz:
https://doaj.org/article/809db08ddaea493bb0e4bd28f0b25b73
Autor:
Shengcheng Dong, Nanxiang Zhao, Emma Spragins, Meenakshi S. Kagda, Mingjie Li, Pedro Assis, Otto Jolanki, Yunhai Luo, J. Michael Cherry, Alan P. Boyle, Benjamin C. Hitz
Publikováno v:
Nature Genetics. 55:724-726
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b666769632ee487c52d8979cecfec976
https://doi.org/10.1038/s41588-023-01365-3
https://doi.org/10.1038/s41588-023-01365-3
Autor:
Fairlie Reese, Brian Williams, Gabriela Balderrama-Gutierrez, Dana Wyman, Muhammed Hasan Çelik, Elisabeth Rebboah, Narges Rezaie, Diane Trout, Milad Razavi-Mohseni, Yunzhe Jiang, Beatrice Borsari, Samuel Morabito, Heidi Yahan Liang, Cassandra J. McGill, Sorena Rahmanian, Jasmine Sakr, Shan Jiang, Weihua Zeng, Klebea Carvalho, Annika K. Weimer, Louise A. Dionne, Ariel McShane, Karan Bedi, Shaimae I. Elhajjajy, Sean Upchurch, Jennifer Jou, Ingrid Youngworth, Idan Gabdank, Paul Sud, Otto Jolanki, J. Seth Strattan, Meenakshi S. Kagda, Michael P. Snyder, Ben C. Hitz, Jill E. Moore, Zhiping Weng, David Bennett, Laura Reinholdt, Mats Ljungman, Michael A. Beer, Mark B. Gerstein, Lior Pachter, Roderic Guigó, Barbara J. Wold, Ali Mortazavi
Publikováno v:
bioRxiv
The majority of mammalian genes encode multiple transcript isoforms that result from differential promoter use, changes in exonic splicing, and alternative 3’ end choice. Detecting and quantifying transcript isoforms across tissues, cell types, and
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b322239296bd726f9e03969616ed0b86
https://europepmc.org/articles/PMC10245583/
https://europepmc.org/articles/PMC10245583/
Autor:
Benjamin C. Hitz, Jin-Wook Lee, Otto Jolanki, Meenakshi S. Kagda, Keenan Graham, Paul Sud, Idan Gabdank, J. Seth Strattan, Cricket A. Sloan, Timothy Dreszer, Laurence D. Rowe, Nikhil R. Podduturi, Venkat S. Malladi, Esther T. Chan, Jean M. Davidson, Marcus Ho, Stuart Miyasato, Matt Simison, Forrest Tanaka, Yunhai Luo, Ian Whaling, Eurie L. Hong, Brian T. Lee, Richard Sandstrom, Eric Rynes, Jemma Nelson, Andrew Nishida, Alyssa Ingersoll, Michael Buckley, Mark Frerker, Daniel S Kim, Nathan Boley, Diane Trout, Alex Dobin, Sorena Rahmanian, Dana Wyman, Gabriela Balderrama-Gutierrez, Fairlie Reese, Neva C. Durand, Olga Dudchenko, David Weisz, Suhas S. P. Rao, Alyssa Blackburn, Dimos Gkountaroulis, Mahdi Sadr, Moshe Olshansky, Yossi Eliaz, Dat Nguyen, Ivan Bochkov, Muhammad Saad Shamim, Ragini Mahajan, Erez Aiden, Tom Gingeras, Simon Heath, Martin Hirst, W. James Kent, Anshul Kundaje, Ali Mortazavi, Barbara Wold, J. Michael Cherry
The Encyclopedia of DNA elements (ENCODE) project is a collaborative effort to create a comprehensive catalog of functional elements in the human genome. The current database comprises more than 19000 functional genomics experiments across more than
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f3ede3b75e1612917e82c16d5ca40cfb
https://doi.org/10.1101/2023.04.04.535623
https://doi.org/10.1101/2023.04.04.535623
Autor:
Shengcheng Dong, Nanxiang Zhao, Emma Spragins, Meenakshi S. Kagda, Mingjie Li, Pedro Assis, Otto Jolanki, Yunhai Luo, J Michael Cherry, Alan P Boyle, Benjamin C Hitz
Nearly 90% of the disease risk-associated variants identified from genome-wide association studies (GWAS) are in non-coding regions of the genome. The annotations obtained from analyzing functional genomics assays can provide additional information t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::a6e59f7f84418a4aef6b436486ecf8bf
https://doi.org/10.1101/2022.10.18.512627
https://doi.org/10.1101/2022.10.18.512627
Autor:
Casey Litton, Zachary Myers, Ulugbek K. Baymuradov, Benjamin C. Hitz, Meenakshi S. Kagda, Otto Jolanki, Jin-Wook Lee, Stuart R. Miyasato, Keenan Graham, Idan Gabdank, Forrest Y. Tanaka, Bonita R. Lam, J. Seth Strattan, Jason A. Hilton, J. Michael Cherry, Yunhai Luo, Philip Adenekan, Paul Sud, Emma O'Neill, Jennifer Jou, Khine Lin
Publikováno v:
Nucleic Acids Research
The Encyclopedia of DNA Elements (ENCODE) is an ongoing collaborative research project aimed at identifying all the functional elements in the human and mouse genomes. Data generated by the ENCODE consortium are freely accessible at the ENCODE portal
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::08e2e8e12e7882454a39508918cc9f1f
https://doi.org/10.1093/nar/gkz1062
https://doi.org/10.1093/nar/gkz1062
Publikováno v:
mBio, vol 11, iss 5
mBio, Vol 11, Iss 5 (2020)
mBio
mBio, Vol 11, Iss 5 (2020)
mBio
Oomycetes cause hundreds of diseases in economically and environmentally significant plants. How these microbes acquire host nutrients is not well understood. Many oomycetes insert specialized hyphae called haustoria into plant cells, but unlike thei
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1e30c36997a5b5409461c0281311d2f1
https://escholarship.org/uc/item/05q3t47v
https://escholarship.org/uc/item/05q3t47v
Co-evolution between transposable elements (TEs) and their hosts can be antagonistic, where TEs evolve to avoid silencing and the host responds by reestablishing TE suppression, or mutualistic, where TEs are co-opted to benefit their host. TheTART-AT
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::559b344a8efbabd52b9995b3a900702a
https://doi.org/10.1101/2020.02.20.957324
https://doi.org/10.1101/2020.02.20.957324
Autor:
J. Seth Strattan, Khine Lin, Keenan Graham, Casey Litton, Emma O'Neill, Philip Adenekan, Jason A. Hilton, Paul Sud, Benjamin C. Hitz, Idan Gabdank, J. Michael Cherry, Yunhai Luo, Forrest Y. Tanaka, Zachary Myers, Jennifer Jou, Stuart R. Miyasato, Ulugbek K. Baymuradov, Otto Jolanki, Meenakshi S. Kagda, Jin-Wook Lee, Bonita R. Lam
Publikováno v:
Curr Protoc Bioinformatics
The Encyclopedia of DNA Elements (ENCODE) web portal hosts genomic data generated by the ENCODE Consortium, Genomics of Gene Regulation, The NIH Roadmap Epigenomics Consortium, and the modENCODE and modERN projects. The goal of the ENCODE project is
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fb1bc105c4b758cead808cabc90f0848
https://pubmed.ncbi.nlm.nih.gov/31751002
https://pubmed.ncbi.nlm.nih.gov/31751002