Measuring the burden of hundreds of BioBricks defines an evolutionary limit on constructability in synthetic biology.

Autor: Radde N; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA., Mortensen GA; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA., Bhat D; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA., Shah S; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA., Clements JJ; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA., Leonard SP; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA., McGuffie MJ; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA., Mishler DM; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA.; The Freshman Research Initiative, College of Natural Sciences, The University of Texas at Austin, Austin, TX, USA., Barrick JE; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA. jbarrick@cm.utexas.edu.

Publikováno v: Nature communications [Nat Commun] 2024 Jul 24; Vol. 15 (1), pp. 6242. Date of Electronic Publication: 2024 Jul 24.

Growth-dependent Gene Expression Variation Influences the Strength of Codon Usage Biases.

Autor: Johnson MM; Department of Integrative Biology, The University of Texas at Austin, Austin, TX, USA., Hockenberry AJ; Department of Integrative Biology, The University of Texas at Austin, Austin, TX, USA., McGuffie MJ; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA., Vieira LC; Department of Integrative Biology, The University of Texas at Austin, Austin, TX, USA., Wilke CO; Department of Integrative Biology, The University of Texas at Austin, Austin, TX, USA.

Publikováno v: Molecular biology and evolution [Mol Biol Evol] 2023 Sep 01; Vol. 40 (9).

pLannotate: engineered plasmid annotation.

Autor: McGuffie MJ; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, 2500 Speedway A5000, Austin, TX 78712, USA., Barrick JE; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, 2500 Speedway A5000, Austin, TX 78712, USA.

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2021 Jul 02; Vol. 49 (W1), pp. W516-W522.

Zinc oxide nanoparticle suspensions and layer-by-layer coatings inhibit staphylococcal growth.

Autor: McGuffie MJ; Department of Emergency Medicine, Ann Arbor, MI, USA; Michigan Center for Integrative Research in Critical Care, Ann Arbor, MI, USA; Biointerfaces Institute University of Michigan, Ann Arbor, MI, USA., Hong J; Key Laboratory of Biomedical Functional Materials, School of Sciences, China Pharmaceutical University, Nanjing, China., Bahng JH; Department of Biomedical Engineering, Ann Arbor, MI, USA., Glynos E; Department of Materials Science and Engineering, Ann Arbor, MI, USA; Biointerfaces Institute University of Michigan, Ann Arbor, MI, USA., Green PF; Department of Chemical Engineering, Ann Arbor, MI, USA; Department of Materials Science and Engineering, Ann Arbor, MI, USA; Department of Applied Physics, Ann Arbor, MI, USA., Kotov NA; Department of Chemical Engineering, Ann Arbor, MI, USA; Department of Biomedical Engineering, Ann Arbor, MI, USA; Department of Materials Science and Engineering, Ann Arbor, MI, USA; Department of Macromolecular Science and Engineering, Ann Arbor, MI, USA; Biointerfaces Institute University of Michigan, Ann Arbor, MI, USA., Younger JG; Department of Emergency Medicine, Ann Arbor, MI, USA; Michigan Center for Integrative Research in Critical Care, Ann Arbor, MI, USA; Biointerfaces Institute University of Michigan, Ann Arbor, MI, USA., VanEpps JS; Department of Emergency Medicine, Ann Arbor, MI, USA; Michigan Center for Integrative Research in Critical Care, Ann Arbor, MI, USA; Biointerfaces Institute University of Michigan, Ann Arbor, MI, USA. Electronic address: jvane@med.umich.edu.

Publikováno v: Nanomedicine : nanotechnology, biology, and medicine [Nanomedicine] 2016 Jan; Vol. 12 (1), pp. 33-42. Date of Electronic Publication: 2015 Oct 27.

No assembly required: Time for stronger, simpler publishing standards for DNA sequences.

Autor: Thuronyi, B W.¹ (AUTHOR), DeBenedictis, Erika A.² (AUTHOR), Barrick, Jeffrey E.³ (AUTHOR) jbarrick@cm.utexas.edu

Publikováno v: PLoS Biology. 11/16/2023, Vol. 21 Issue 11, p1-4. 4p.