Zobrazeno 1 - 10
of 22
pro vyhledávání: '"Maxime Folschette"'
Autor:
Maxime Folschette, Vincent Legagneux, Arnaud Poret, Lokmane Chebouba, Carito Guziolowski, Nathalie Théret
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-14 (2020)
Abstract Background Integrating genome-wide gene expression patient profiles with regulatory knowledge is a challenging task because of the inherent heterogeneity, noise and incompleteness of biological data. From the computational side, several solv
Externí odkaz:
https://doaj.org/article/8853508052934fa38cea3be7db971abe
Publikováno v:
Algorithms for Molecular Biology, Vol 12, Iss 1, Pp 1-23 (2017)
Abstract Background This paper addresses the problem of finding attractors in biological regulatory networks. We focus here on non-deterministic synchronous and asynchronous multi-valued networks, modeled using automata networks (AN). AN is a general
Externí odkaz:
https://doaj.org/article/f24bd07b1dae426cbb2da3fab608bb04
Publikováno v:
Proceedings of the 16th International Joint Conference on Biomedical Engineering Systems and Technologies-BIOINFORMATICS
International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2023)
International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2023), Feb 2023, Lisbon, Portugal. pp.29-40, ⟨10.5220/0011614300003414⟩
International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2023)
International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2023), Feb 2023, Lisbon, Portugal. pp.29-40, ⟨10.5220/0011614300003414⟩
International audience; In this work, we study the existence of sustained oscillations in the "canonical" repressilator, a basic synthetic circuit of 3 genes leading to sustained oscillations. Previous works mostly used differential equations to stud
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3f11ca5dd70e30f3d8156705565b7982
https://hal.science/hal-03902156/document
https://hal.science/hal-03902156/document
Autor:
Tony RIBEIRO, Maxime FOLSCHETTE, Laurent TRILLING, Nicolas GLADE, Katsumi INOUE, Morgan MAGNIN, Olivier ROUX
Ce chapitre dresse un panorama des approches portant sur l’élaboration de modèles qualitatifs de réseaux de régulation, via des démarches s’apparentant au model-checking (pour l’analyse) et à la programmation logique (pour l’inférence)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::da6f2d095abeac27dfd6afd33321c836
https://doi.org/10.51926/iste.9029.ch3
https://doi.org/10.51926/iste.9029.ch3
Publikováno v:
Computational Methods in Systems Biology ISBN: 9783031150333
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::6bb234f62e81d881106716c84ad220f9
https://doi.org/10.1007/978-3-031-15034-0_11
https://doi.org/10.1007/978-3-031-15034-0_11
Publikováno v:
1st International Joint Conference on Learning & Reasoning
1st International Joint Conference on Learning & Reasoning, Oct 2021, (virtual), Greece
HAL
1st International Joint Conference on Learning & Reasoning, Oct 2021, (virtual), Greece
HAL
International audience; Learning from interpretation transition (LFIT) automatically constructs a model of the dynamics of a system from the observation of its state transitions. The previously proposed General Usage LFIT Algorithm (GULA) serves as t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::b7d68184f65bef56c8c2e159479e8ab5
https://hal.archives-ouvertes.fr/hal-03347026/document
https://hal.archives-ouvertes.fr/hal-03347026/document
Publikováno v:
1st International Joint Conference on Learning & Reasoning
1st International Joint Conference on Learning & Reasoning, Oct 2021, (virtual), Greece
HAL
1st International Joint Conference on Learning & Reasoning, Oct 2021, (virtual), Greece
HAL
International audience; Marine ecology models are used to study and anticipate population variations of plankton and microalgae species. These variations can have an impact on ecological niches, the economy or the climate. Our objective is the automa
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::85ef4b7a986d4fd78006341a6c4df976
https://hal.science/hal-03347033
https://hal.science/hal-03347033
Publikováno v:
Database-The journal of Biological Databases and Curation
Database-The journal of Biological Databases and Curation, Oxford University Press, 2021, 2021, pp.baaa113. ⟨10.1093/database/baaa113⟩
Database-The journal of Biological Databases and Curation, 2021, 2021, pp.baaa113. ⟨10.1093/database/baaa113⟩
Database: The Journal of Biological Databases and Curation
Database-The journal of Biological Databases and Curation, Oxford University Press, 2021, 2021, pp.baaa113. ⟨10.1093/database/baaa113⟩
Database-The journal of Biological Databases and Curation, 2021, 2021, pp.baaa113. ⟨10.1093/database/baaa113⟩
Database: The Journal of Biological Databases and Curation
Huge efforts are currently underway to address the organization of biological knowledge through linked open databases. These databases can be automatically queried to reconstruct regulatory and signaling networks. However, assembling networks implies
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a54cc53b0e90b0edef8413963f74f55e
https://hal.archives-ouvertes.fr/hal-03107317v1/document
https://hal.archives-ouvertes.fr/hal-03107317v1/document
Autor:
Arnaud Poret, Nathalie Théret, Lokmane Chebouba, Maxime Folschette, Vincent Legagneux, Carito Guziolowski
Publikováno v:
BMC Bioinformatics
BMC Bioinformatics, BioMed Central, 2020, 21 (1), pp.18. ⟨10.1186/s12859-019-3316-1⟩
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-14 (2020)
BMC Bioinformatics, 2020, 21 (1), pp.18. ⟨10.1186/s12859-019-3316-1⟩
BMC Bioinformatics, BioMed Central, 2020, 21 (1), pp.18. ⟨10.1186/s12859-019-3316-1⟩
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-14 (2020)
BMC Bioinformatics, 2020, 21 (1), pp.18. ⟨10.1186/s12859-019-3316-1⟩
BackgroundIntegrating genome-wide gene expression patient profiles with regulatory knowledge is a challenging task because of the inherent heterogeneity, noise and incompleteness of biological data. From the computational side, several solvers for lo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ad0a838353e76438c1eb95b47aac8e18
https://hal.archives-ouvertes.fr/hal-02095930v4/document
https://hal.archives-ouvertes.fr/hal-02095930v4/document
Autor:
Maxime Folschette
Publikováno v:
[Technical Report] Univ. Lille, CNRS, Centrale Lille, UMR 9189-CRIStAL-Centre de Recherche en Informatique Signal et Automatique de Lille, F-59000 Lille, France. 2019
HAL
HAL
This document presents the tool named "Application of Hoare Logic and Dijkstra's Weakest Proposition Calculus to Biological Regulatory Networks Using Path Programs with Branching First-Order Logic Operators" or Hoare-fol for short. This tool consists
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::609b6caac652f0bd1b1560acffff33fb
https://hal.archives-ouvertes.fr/hal-02409801/document
https://hal.archives-ouvertes.fr/hal-02409801/document