A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae

Autor: Linn Fagerberg, Marta Papini, Intawat Nookaew, Natapol Pornputtapong, Matthias Uhlén, Jens Nielsen, Gionata Scalcinati

Publikováno v: Nookaew, I, Papini, M, Pornputtapong, N, Scalcinati, G, Fagerberg, L, Uhlén, M & Nielsen, J 2012, ' A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae ', Nucleic Acids Research, vol. 40, no. 20, pp. 10084-10097 . https://doi.org/10.1093/nar/gks804
Nucleic Acids Research (0305-1048) vol.40(2012)
Nucleic Acids Research

RNA-seq, has recently become an attractive method of choice in the studies of transcriptomes, promising several advantages compared with microarrays. In this study, we sought to assess the contribution of the different analytical steps involved in th

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::428b3f7ea147fdb829939f1e4bdca040
https://doi.org/10.1093/nar/gks804

The Human Cell Atlas

Autor: Aviv Regev, Sarah A Teichmann, Eric S Lander, Ido Amit, Christophe Benoist, Ewan Birney, Bernd Bodenmiller, Peter Campbell, Piero Carninci, Menna Clatworthy, Hans Clevers, Bart Deplancke, Ian Dunham, James Eberwine, Roland Eils, Wolfgang Enard, Andrew Farmer, Lars Fugger, Berthold Göttgens, Nir Hacohen, Muzlifah Haniffa, Martin Hemberg, Seung Kim, Paul Klenerman, Arnold Kriegstein, Ed Lein, Sten Linnarsson, Emma Lundberg, Joakim Lundeberg, Partha Majumder, John C Marioni, Miriam Merad, Musa Mhlanga, Martijn Nawijn, Mihai Netea, Garry Nolan, Dana Pe'er, Anthony Phillipakis, Chris P Ponting, Stephen Quake, Wolf Reik, Orit Rozenblatt-Rosen, Joshua Sanes, Rahul Satija, Ton N Schumacher, Alex Shalek, Ehud Shapiro, Padmanee Sharma, Jay W Shin, Oliver Stegle, Michael Stratton, Michael J T Stubbington, Fabian J Theis, Matthias Uhlen, Alexander van Oudenaarden, Allon Wagner, Fiona Watt, Jonathan Weissman, Barbara Wold, Ramnik Xavier, Nir Yosef, Human Cell Atlas Meeting Participants

Publikováno v: eLife, Vol 6 (2017)

The recent advent of methods for high-throughput single-cell molecular profiling has catalyzed a growing sense in the scientific community that the time is ripe to complete the 150-year-old effort to identify all cell types in the human body. The Hum

Externí odkaz: https://doaj.org/article/f765a09444c745e089e255ad5929e151