Zobrazeno 1 - 10
of 20
pro vyhledávání: '"Matthias Barann"'
Autor:
Fatemeh Behjati Ardakani, Kathrin Kattler, Karl Nordström, Nina Gasparoni, Gilles Gasparoni, Sarah Fuchs, Anupam Sinha, Matthias Barann, Peter Ebert, Jonas Fischer, Barbara Hutter, Gideon Zipprich, Charles D. Imbusch, Bärbel Felder, Jürgen Eils, Benedikt Brors, Thomas Lengauer, Thomas Manke, Philip Rosenstiel, Jörn Walter, Marcel H. Schulz
Publikováno v:
Epigenetics & Chromatin, Vol 11, Iss 1, Pp 1-14 (2018)
Abstract Background Bidirectional promoters (BPs) are prevalent in eukaryotic genomes. However, it is poorly understood how the cell integrates different epigenomic information, such as transcription factor (TF) binding and chromatin marks, to drive
Externí odkaz:
https://doaj.org/article/aeda19e919924fcba37b9cf5784814fb
Autor:
Marc W Schmid, Anja Schmidt, Ulrich C Klostermeier, Matthias Barann, Philip Rosenstiel, Ueli Grossniklaus
Publikováno v:
PLoS ONE, Vol 7, Iss 1, p e29685 (2012)
The acquisition of distinct cell fates is central to the development of multicellular organisms and is largely mediated by gene expression patterns specific to individual cells and tissues. A spatially and temporally resolved analysis of gene express
Externí odkaz:
https://doaj.org/article/08c9b9f237244bc0a84388baf343ebe3
Autor:
Marlene Jentzsch, Michael Nothnagel, Ulrich C. Klostermeier, Joris A. Veltman, Vrunda Sheth, Clarence C. Lee, Christian Gilissen, Simone Lipinski, Agnes Piecyk, Britt-Sabina Petersen, David Ellinghaus, Michael Krawczak, Jan O. Korbel, Konrad Aden, Michael Forster, Matthias Barann, Philip Rosenstiel, Annette Fritscher-Ravens, Florian Tran, Gabriele Mayr, Stephanie T. Stengel, Tobias Rausch, Andre Franke, Peter Forster, Stefan Schreiber
Publikováno v:
Cold Spring Harbor Molecular Case Studies
Cold Spring Harbor Molecular Case Studies, 5
Cold Spring Harbor Molecular Case Studies, 5, 1
Cold Spring Harbor Molecular Case Studies, 5
Cold Spring Harbor Molecular Case Studies, 5, 1
Whole-genome and whole-exome sequencing of individual patients allow the study of rare and potentially causative genetic variation. In this study, we sequenced DNA of a trio comprising a boy with very-early-onset inflammatory bowel disease (veoIBD) a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8225ad4fbca7877a36ccbf8bcb8d0917
https://hdl.handle.net/21.11116/0000-0003-210A-D21.11116/0000-0003-210C-B
https://hdl.handle.net/21.11116/0000-0003-210A-D21.11116/0000-0003-210C-B
Autor:
Philip Rosenstiel, Marcel H. Schulz, Charles D. Imbusch, Benedikt Brors, Baerbel Felder, Barbara Hutter, Sarah Fuchs, Jörn Walter, Jürgen Eils, Fatemeh Behjati Ardakani, Kathrin Kattler, Karl Nordström, Peter Ebert, Nina Gasparoni, Gideon Zipprich, Anupam Sinha, Matthias Barann, Thomas Lengauer, Thomas Manke, Gilles Gasparoni, Jonas Fischer
Publikováno v:
Epigenetics & Chromatin, Vol 11, Iss 1, Pp 1-14 (2018)
Epigenetics & Chromatin
Epigenetics & Chromatin
Background Bidirectional promoters (BPs) are prevalent in eukaryotic genomes. However, it is poorly understood how the cell integrates different epigenomic information, such as transcription factor (TF) binding and chromatin marks, to drive gene expr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6b33ef3b09367681c1e3fc5323ddafec
https://doi.org/10.1186/s13072-018-0236-7
https://doi.org/10.1186/s13072-018-0236-7
Autor:
Marcel H. Schulz, Baerbel Felder, Nina Gasparoni, Thomas Manke, Gilles Gasparoni, Kathrin Kattler, Barbara Hutter, Jonas Fischer, Benedikt Brors, Joern Walter, Anupam Sinha, Peter Ebert, Thomas Lengauer, Philip Rosenstiel, Fatemeh Behjati Ardakani, Sarah Fuchs, Karl Nordström, Gideon Zipprich, Juergen Eils, Matthias Barann
BackgroundBidirectional promoters (BPs) are prevalent in eukaryotic genomes. However, it is poorly understood how the cell integrates different epigenomic information, such as transcription factor (TF) binding and chromatin marks, to drive gene expre
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cf7b618d37df8a91304366e15aac5028
https://doi.org/10.1101/315937
https://doi.org/10.1101/315937
Autor:
S Lipinksi, A Franke, Matthias Barann, Stefan Schreiber, S Stengel, Marlene Jentzsch, Florian Tran, Britt-Sabina Petersen, P Rosenstiel
Publikováno v:
72. Jahrestagung der Deutschen Gesellschaft für Gastroenterologie, Verdauungs- und Stoffwechselkrankheiten mit Sektion Endoskopie – 11. Herbsttagung der Deutschen Gesellschaft für Allgemein- und Viszeralchirurgie gemeinsam mit den Arbeitsgemeinschaften der DGAV.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0bb42889cac925e8846fcb26301e692d
https://doi.org/10.1055/s-0037-1604805
https://doi.org/10.1055/s-0037-1604805
Autor:
Daniela Esser, Jan W. P. Kuiper, Matthias Barann, Tuuli Lappalainen, Anne Luzius, Philip Rosenstiel, Inga Vater, Ulrich C. Klostermeier, Vyacheslav Amstislavskiy, Ralf Sudbrak, Reiner Siebert, Stefan Schreiber, Ole Ammerpohl, Hans Lehrach
Publikováno v:
Bioinformatics; Vol 29
Bioinformatics
Bioinformatics
Motivation: Protocols to generate strand-specific transcriptomes with next-generation sequencing platforms have been used by the scientific community roughly since 2008. Strand-specific reads allow for detection of antisense events and a higher resol
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4bd64e8b48b0d97c9541d7031f02e4f4
Autor:
Peter Ebert, Jieyi Xiong, Baerbel Felder, Fatemeh Behjati Ardakani, Barbara Hutter, Matthias Barann, Kathrin Gianmoena, Benedikt Brors, Marcel H. Schulz, Wei Chen, Jörn Walter, Philip Rosenstiel, Azim Dehghani Amirabad, Jan G. Hengstler, Alf Hamann, Jürgen Eils, Anupam Sinha, Karl Nordström, Thomas Lengauer, Gideon Zipprich, Florian Schmidt, Julia K. Polansky, Nina Gasparoni, Gilles Gasparoni, Sebastian Froehler, Cristina Cadenas
Publikováno v:
Nucleic Acids Research
Nucleic acids research, 45(1):54–66
Nucleic acids research, 45(1):54–66
The binding and contribution of transcription factors (TF) to cell specific gene expression is often deduced from open-chromatin measurements to avoid costly TF ChIP-seq assays. Thus, it is important to develop computational methods for accurate TF b
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::29f693851b069e8c0dc2c900aa33a7b2
https://pubmed.ncbi.nlm.nih.gov/27899623
https://pubmed.ncbi.nlm.nih.gov/27899623
Autor:
Ateequr Rehman, Marc-Thorsten Hütt, B. Brandt, Sascha Schäuble, Christoph Kaleta, Daniela Esser, Michael Krawczak, Werner Müller, Robert Häsler, Philip Rosenstiel, Christoph Fretter, Matthias Barann, Andre Franke, Konrad Aden, Anupam Sinha, Raheleh Sheibani-Tezerji, Stefan Schreiber, Susanna Nikolaus, Carolin Knecht
Publikováno v:
Häsler, R, Sheibani-Tezerji, R, Sinha, A, Barann, M, Rehman, A, Esser, D, Aden, K, Knecht, C, Brandt, B, Nikolaus, S, Schäuble, S, Kaleta, C, Franke, A, Fretter, C, Muller, W, Hütt, M-T, Krawczak, M, Schreiber, S & Rosenstiel, P 2016, ' Uncoupling of mucosal gene regulation, mRNA splicing and adherent microbiota signatures in inflammatory bowel disease ', Gut . https://doi.org/10.1136/gutjnl-2016-311651
Gut
BASE-Bielefeld Academic Search Engine
Gut
BASE-Bielefeld Academic Search Engine
ObjectiveAn inadequate host response to the intestinal microbiota likely contributes to the manifestation and progression of human inflammatory bowel disease (IBD). However, molecular approaches to unravelling the nature of the defective crosstalk an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7adb61018850f856f4b4b4e1ec304190
https://www.research.manchester.ac.uk/portal/en/publications/uncoupling-of-mucosal-gene-regulation-mrna-splicing-and-adherent-microbiota-signatures-in-inflammatory-bowel-disease(e156cbeb-5293-46b7-9c0d-24e0af03ff80).html
https://www.research.manchester.ac.uk/portal/en/publications/uncoupling-of-mucosal-gene-regulation-mrna-splicing-and-adherent-microbiota-signatures-in-inflammatory-bowel-disease(e156cbeb-5293-46b7-9c0d-24e0af03ff80).html
Autor:
Karl Nordström, Gilles Gasparoni, Sebastian Fröhler, Gideon Zipprich, Elsa Leitão, Thomas Manke, Ludger Klein-Hitpass, Wei Chen, Daniela Beißer, Christopher Schröder, Gerd Schmitz, Bernhard Horsthemke, Tea Berulava, Jörn Walter, Matthias Barann, Thomas Lengauer, Philip Rosenstiel, Ulrike Bönisch, Stefan Wallner, Claudia Haak, Corinna Attenberger, Filippos Klironomos, Bärbel Felder, Sven Rahmann, Peter Ebert, Laura Arrigoni, Andreas S. Richter, Fabian Müller, Benedikt Brors, Nikolaus Rajewsky
Publikováno v:
Epigenetics & Chromatin
Background Monocyte-to-macrophage differentiation involves major biochemical and structural changes. In order to elucidate the role of gene regulatory changes during this process, we used high-throughput sequencing to analyze the complete transcripto
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::90b0d643fe419e417dd56d39097064a7
https://hdl.handle.net/11858/00-001M-0000-002B-1693-211858/00-001M-0000-002B-1691-6
https://hdl.handle.net/11858/00-001M-0000-002B-1693-211858/00-001M-0000-002B-1691-6