Zobrazeno 1 - 10
of 47
pro vyhledávání: '"Matthew Z. DeMaere"'
Autor:
Paige Strudwick, David J. Suggett, Justin R. Seymour, Matthew Z. DeMaere, Amanda Grima, John Edmondson, Alicia McArdle, Freda Nicholson, Emma F. Camp
Publikováno v:
Frontiers in Marine Science, Vol 11 (2024)
Significant threats to the long-term persistence of coral reefs have accelerated the adoption of coral propagation and out-planting approaches. However, how materials commonly used for propagation structures could potentially affect coral-associated
Externí odkaz:
https://doaj.org/article/d062c51c12ec48de9d499b03fcc8a714
High contiguity genome sequence of a multidrug-resistant hospital isolate of Enterobacter hormaechei
Autor:
Leigh G. Monahan, Matthew Z. DeMaere, Max L. Cummins, Steven P. Djordjevic, Piklu Roy Chowdhury, Aaron E. Darling
Publikováno v:
Gut Pathogens, Vol 11, Iss 1, Pp 1-6 (2019)
Abstract Background Enterobacter hormaechei is an important emerging pathogen and a key member of the highly diverse Enterobacter cloacae complex. E. hormaechei strains can persist and spread in nosocomial environments, and often exhibit resistance t
Externí odkaz:
https://doaj.org/article/8df681757b60417a8c628699895d62ba
Autor:
Matthew Z. DeMaere, Aaron E. Darling
Publikováno v:
Genome Biology, Vol 20, Iss 1, Pp 1-16 (2019)
Abstract Most microbes cannot be easily cultured, and metagenomics provides a means to study them. Current techniques aim to resolve individual genomes from metagenomes, so-called metagenome-assembled genomes (MAGs). Leading approaches depend upon ti
Externí odkaz:
https://doaj.org/article/a253eedd2a4344cf865831a878298d17
Autor:
Adrian Fritz, Peter Hofmann, Stephan Majda, Eik Dahms, Johannes Dröge, Jessika Fiedler, Till R. Lesker, Peter Belmann, Matthew Z. DeMaere, Aaron E. Darling, Alexander Sczyrba, Andreas Bremges, Alice C. McHardy
Publikováno v:
Microbiome, Vol 7, Iss 1, Pp 1-12 (2019)
Abstract Background Shotgun metagenome data sets of microbial communities are highly diverse, not only due to the natural variation of the underlying biological systems, but also due to differences in laboratory protocols, replicate numbers, and sequ
Externí odkaz:
https://doaj.org/article/691fffe684ce4951892d70988eef06af
Autor:
Bernhard Tschitschko, Susanne Erdmann, Matthew Z. DeMaere, Simon Roux, Pratibha Panwar, Michelle A. Allen, Timothy J. Williams, Sarah Brazendale, Alyce M. Hancock, Emiley A. Eloe-Fadrosh, Ricardo Cavicchioli
Publikováno v:
Microbiome, Vol 6, Iss 1, Pp 1-16 (2018)
Abstract Background The genomes of halophilic archaea (haloarchaea) often comprise multiple replicons. Genomic variation in haloarchaea has been linked to viral infection pressure and, in the case of Antarctic communities, can be caused by intergener
Externí odkaz:
https://doaj.org/article/f2c8e69fa59e48f984a3f6a132914524
Autor:
Ethan R. Wyrsch, Cameron J. Reid, Matthew Z. DeMaere, Michael Y. Liu, Toni A. Chapman, Piklu Roy Chowdhury, Steven P. Djordjevic
Publikováno v:
Frontiers in Sustainable Food Systems, Vol 3 (2019)
IncHI2 ST3 plasmids are known carriers of multiple antimicrobial resistance genes. Complete plasmid sequences from multiple drug resistant Escherichia coli circulating in Australian swine is however limited. Here we sequenced two related IncHI2 ST3 p
Externí odkaz:
https://doaj.org/article/618f81ddc0d24143be75cbcc46155f54
Autor:
Michael Y. Liu, Paul Worden, Leigh G. Monahan, Matthew Z. DeMaere, Catherine M. Burke, Steven P. Djordjevic, Ian G. Charles, Aaron E. Darling
Publikováno v:
PeerJ, Vol 5, p e3837 (2017)
Background Profiling of microbial communities via metagenomic shotgun sequencing has enabled researches to gain unprecedented insight into microbial community structure and the functional roles of community members. This study describes a method and
Externí odkaz:
https://doaj.org/article/0a956b42d083456d898981c9f10457c9
Autor:
Matthew Z. DeMaere, Aaron E. Darling
Publikováno v:
PeerJ, Vol 4, p e2676 (2016)
Background Chromosome conformation capture, coupled with high throughput DNA sequencing in protocols like Hi-C and 3C-seq, has been proposed as a viable means of generating data to resolve the genomes of microorganisms living in naturally occuring en
Externí odkaz:
https://doaj.org/article/4d879c6f616044dc9fc871529460a674
Autor:
Sidaswar Krishnan, Matthew Z DeMaere, Dominik Beck, Martin Ostrowski, Justin R Seymour, Aaron E Darling
Publikováno v:
PLoS Genetics, Vol 19, Iss 3, p e1010683 (2023)
Prokaryotic evolution is influenced by the exchange of genetic information between species through a process referred to as recombination. The rate of recombination is a useful measure for the adaptive capacity of a prokaryotic population. We introdu
Externí odkaz:
https://doaj.org/article/b55bab9d946f48b5937b21ef62a30408
Autor:
Daniela Gaio, Matthew Z DeMaere, Kay Anantanawat, Graeme J Eamens, Linda Falconer, Toni A Chapman, Steven Djordjevic, Aaron E Darling
Publikováno v:
PLoS ONE, Vol 17, Iss 6, p e0270372 (2022)
Intensive farming practices can increase exposure of animals to infectious agents against which antibiotics are used. Orally administered antibiotics are well known to cause dysbiosis. To counteract dysbiotic effects, numerous studies in the past two
Externí odkaz:
https://doaj.org/article/643bb5e608c6405d9c91571509fe83a9