Transforming the study of organisms: Phenomic data models and knowledge bases.

Autor: Anne E Thessen, Ramona L Walls, Lars Vogt, Jessica Singer, Robert Warren, Pier Luigi Buttigieg, James P Balhoff, Christopher J Mungall, Deborah L McGuinness, Brian J Stucky, Matthew J Yoder, Melissa A Haendel

Publikováno v: PLoS Computational Biology, Vol 16, Iss 11, p e1008376 (2020)

The rapidly decreasing cost of gene sequencing has resulted in a deluge of genomic data from across the tree of life; however, outside a few model organism databases, genomic data are limited in their scientific impact because they are not accompanie

Externí odkaz: https://doaj.org/article/4b8bcdf688004a8fa2f478e5a611892e

Enhanced monography in a collaboratively evolved hub for systematic biology

Autor: Jennifer C. Girón, Eugenio Valderrama, Patrick M. O'Connor, Nancy B. Simmons, Deborah L. Paul, Matthew J. Yoder

Publikováno v: Bulletin of the Society of Systematic Biologists. 1

No abstract available.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::24c02b3ba186e238e9b3d63f1c718379
https://doi.org/10.18061/bssb.v1i1.8340

Nomenclature over 5 years in TaxonWorks: Approach, implementation, limitations and outcomes

Autor: Matthew J. Yoder, Dmitry A. Dmitriev

Publikováno v: Biodiversity Information Science and Standards 5: e75441

We are now over four decades into digitally managing the names of Earth's species. As the number of federating (i.e., software that brings together previously disparate projects under a common infrastructure, for example TaxonWorks) and aggregating (

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2408bf506389dd5d5fd711003ee5ae3d
https://doi.org/10.3897/biss.5.75441

Finding our way through phenotypes.

Autor: Andrew R Deans, Suzanna E Lewis, Eva Huala, Salvatore S Anzaldo, Michael Ashburner, James P Balhoff, David C Blackburn, Judith A Blake, J Gordon Burleigh, Bruno Chanet, Laurel D Cooper, Mélanie Courtot, Sándor Csösz, Hong Cui, Wasila Dahdul, Sandip Das, T Alexander Dececchi, Agnes Dettai, Rui Diogo, Robert E Druzinsky, Michel Dumontier, Nico M Franz, Frank Friedrich, George V Gkoutos, Melissa Haendel, Luke J Harmon, Terry F Hayamizu, Yongqun He, Heather M Hines, Nizar Ibrahim, Laura M Jackson, Pankaj Jaiswal, Christina James-Zorn, Sebastian Köhler, Guillaume Lecointre, Hilmar Lapp, Carolyn J Lawrence, Nicolas Le Novère, John G Lundberg, James Macklin, Austin R Mast, Peter E Midford, István Mikó, Christopher J Mungall, Anika Oellrich, David Osumi-Sutherland, Helen Parkinson, Martín J Ramírez, Stefan Richter, Peter N Robinson, Alan Ruttenberg, Katja S Schulz, Erik Segerdell, Katja C Seltmann, Michael J Sharkey, Aaron D Smith, Barry Smith, Chelsea D Specht, R Burke Squires, Robert W Thacker, Anne Thessen, Jose Fernandez-Triana, Mauno Vihinen, Peter D Vize, Lars Vogt, Christine E Wall, Ramona L Walls, Monte Westerfeld, Robert A Wharton, Christian S Wirkner, James B Woolley, Matthew J Yoder, Aaron M Zorn, Paula Mabee

Publikováno v: PLoS Biology, Vol 13, Iss 1, p e1002033 (2015)

Despite a large and multifaceted effort to understand the vast landscape of phenotypic data, their current form inhibits productive data analysis. The lack of a community-wide, consensus-based, human- and machine-interpretable language for describing

Externí odkaz: https://doaj.org/article/c6769cb8ebf0434ea3c4cd1a41ec45d2

WCO-Lite version 1.1: an online nomenclatural catalogue of harvestmen of the world (Arachnida, Opiliones) curated in TaxonWorks

Autor: Amanda Cruz Mendes, Matthew J. Yoder, Alexia de Andrade Granado, Milena Souza Kury, Lilian Cardoso, Ian S. Kury, Adriano B. Kury

Publikováno v: Zootaxa. 4908(3)

The “World Catalogue of Opiliones” (WCO) is a collaborative effort to comprehensively index the Earth’s species of harvestmen. This paper announces one component of the WCO, “WCO-Lite” a website available at https://wcolite.com/. WCO-Lite p

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::256f7d527898471f7ced3a373165ec9a
https://pubmed.ncbi.nlm.nih.gov/33756618