Zobrazeno 1 - 10
of 24
pro vyhledávání: '"Matthew I M Pinder"'
Autor:
Harshith Bachimanchi, Matthew I. M. Pinder, Chloé Robert, Pierre De Wit, Jonathan Havenhand, Alexandra Kinnby, Daniel Midtvedt, Erik Selander, Giovanni Volpe
Publikováno v:
Limnology and Oceanography Letters, Vol 9, Iss 4, Pp 324-339 (2024)
ABSTRACT The implementation of deep learning algorithms has brought new perspectives to plankton ecology. Emerging as an alternative approach to established methods, deep learning offers objective schemes to investigate plankton organisms in diverse
Externí odkaz:
https://doaj.org/article/90849ce8678f4405902f6993e60a8dd2
Autor:
Oskar N. Johansson, Matthew I. M. Pinder, Fredrik Ohlsson, Jenny Egardt, Mats Töpel, Adrian K. Clarke
Publikováno v:
Frontiers in Microbiology, Vol 10 (2019)
Marine diatoms are the dominant phytoplankton in the temperate oceans and coastal regions, contributing to global photosynthesis, biogeochemical cycling of key nutrients and minerals and aquatic food chains. Integral to the success of marine diatoms
Externí odkaz:
https://doaj.org/article/9423ac7c290c49549b0d51389460c8a5
Autor:
Matthew I M Pinder, Björn Andersson, Karin Rengefors, Hannah Blossom, Marie Svensson, Mats Töpel
Evolutionary changes in populations of microbes, such as microalgae, cannot be traced using conventional metabarcoding loci as they lack intraspecific resolution. Consequently, selection and competition processes amongst strains of the same species c
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::73d278596025296c59996353a3076057
https://doi.org/10.1101/2023.03.16.532925
https://doi.org/10.1101/2023.03.16.532925
Autor:
Matthew I. M. Pinder, Mats Töpel
Publikováno v:
The Molecular Life of Diatoms ISBN: 9783030924980
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d9d36fbec25350efbe940d7c369909f4
https://doi.org/10.1007/978-3-030-92499-7_4
https://doi.org/10.1007/978-3-030-92499-7_4
Autor:
Adrian K. Clarke, Anna Godhe, Jenny Egardt, Oskar N. Johansson, Mats Töpel, Mats X. Andersson, Matthew I. M. Pinder
Publikováno v:
Scientific Reports, Vol 9, Iss 1, Pp 1-11 (2019)
Scientific Reports
Scientific Reports
Diatoms are the dominant phytoplankton in temperate oceans and coastal regions and yet little is known about the genetic basis underpinning their global success. Here, we address this challenge by developing the first phenomic approach for a diatom,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fbd25d0b54527b4914136da4ddf42436
http://link.springer.com/article/10.1038/s41598-019-51683-y
http://link.springer.com/article/10.1038/s41598-019-51683-y
Autor:
Oskar N. Johansson, Adrian K. Clarke, Anna Godhe, Mats Töpel, Alvar Almstedt, Matthew I. M. Pinder, Olga Kourtchenko
Publikováno v:
Journal of Genomics
Initial efforts to sequence the genome of the marine diatom Skeletonema marinoi were hampered by the presence of genetic material from bacteria, and there was sufficient material from some of these bacteria to enable the assembly of full chromosomes.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c974d301521aa0f5ae2017e06bb9a898
http://europepmc.org/articles/PMC6536808
http://europepmc.org/articles/PMC6536808
Autor:
Oskar N. Johansson, Mats Töpel, Anna Godhe, Adrian K. Clarke, Olga Kourtchenko, Matthew I. M. Pinder
Publikováno v:
Journal of Genomics. 7:7-10
When studying diatoms, an important consideration is the role of associated bacteria in the diatom-microbiome holobiont. To that end, bacteria isolated from a culture of Skeletonema marinoi strain R05AC were sequenced, one of which being bacterial st
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::15704992ba58f577a23b7e16fc9b0e53
https://doi.org/10.7150/jgen.30559
https://doi.org/10.7150/jgen.30559
Autor:
Olga Kourtchenko, Matthew I. M. Pinder, Oskar N. Johansson, Mats Töpel, Anna Godhe, Adrian K. Clarke
Publikováno v:
Journal of Genomics
Attempts to obtain axenic cultures of the marine diatom Skeletonema marinoi often result in poor growth, indicating the importance of the microbiome to the growth of its host. In order to identify the precise roles played by these associated bacteria
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d4f943e63610a26e1b0187d9c418074e
https://doi.org/10.7150/jgen.39039
https://doi.org/10.7150/jgen.39039
Autor:
Mats, Töpel, Matthew I M, Pinder, Oskar N, Johansson, Olga, Kourtchenko, Anna, Godhe, Adrian K, Clarke
Publikováno v:
Microbiology Resource Announcements
The bacterial strain SMR4y belongs to the diverse microbiome of the marine diatom Skeletonema marinoi strain R05AC. After assembly of its genome, presented here, and subsequent analyses, we placed it in the genus Sphingorhabdus. This strain has a 3,4
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::5a87b74becb9ca2de27e934dd5435a72
https://pubmed.ncbi.nlm.nih.gov/31320411
https://pubmed.ncbi.nlm.nih.gov/31320411
Autor:
Olga Kourtchenko, Anna Godhe, Adrian K. Clarke, Matthew I. M. Pinder, Mats Töpel, Oskar N. Johansson
Publikováno v:
Microbiology Resource Announcements. 8
The bacterial strain SMR4y belongs to the diverse microbiome of the marine diatom Skeletonema marinoi strain R05AC. After assembly of its genome, presented here, and subsequent analyses, we placed it in the genus Sphingorhabdus . This strain has a 3,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::eb07269cab652f900916e0050e9f0b57
https://doi.org/10.1128/mra.00482-19
https://doi.org/10.1128/mra.00482-19