Zobrazeno 1 - 10
of 15
pro vyhledávání: '"Matthew E. MacGilvray"'
Autor:
Ali Sinan Köksal, Kirsten Beck, Dylan R. Cronin, Aaron McKenna, Nathan D. Camp, Saurabh Srivastava, Matthew E. MacGilvray, Rastislav Bodík, Alejandro Wolf-Yadlin, Ernest Fraenkel, Jasmin Fisher, Anthony Gitter
Publikováno v:
Cell Reports, Vol 24, Iss 13, Pp 3607-3618 (2018)
Summary: We present a method for automatically discovering signaling pathways from time-resolved phosphoproteomic data. The Temporal Pathway Synthesizer (TPS) algorithm uses constraint-solving techniques first developed in the context of formal verif
Externí odkaz:
https://doaj.org/article/48caac5bc5e443d090361032f80a4b17
Autor:
Joshua J. Coon, Audrey P. Gasch, Michael Place, Matthew E. MacGilvray, Ellen R. Wagner, Evgenia Shishkova
Publikováno v:
Journal of Proteome Research. 19:3405-3417
To cope with sudden changes in the external environment, the budding yeast Saccharomyces cerevisiae orchestrates a multifaceted response that spans many levels of physiology. Several studies have i...
Autor:
Deborah Chasman, Yi‐Hsuan Ho, David B Berry, Corey M Nemec, Matthew E MacGilvray, James Hose, Anna E Merrill, M Violet Lee, Jessica L Will, Joshua J Coon, Aseem Z Ansari, Mark Craven, Audrey P Gasch
Publikováno v:
Molecular Systems Biology, Vol 10, Iss 11, Pp n/a-n/a (2014)
Abstract Stressed cells coordinate a multi‐faceted response spanning many levels of physiology. Yet knowledge of the complete stress‐activated regulatory network as well as design principles for signal integration remains incomplete. We developed
Externí odkaz:
https://doaj.org/article/06b8235ccb524af8a37b83247b850aa4
Autor:
Matthew E, MacGilvray, Evgenia, Shishkova, Michael, Place, Ellen R, Wagner, Joshua J, Coon, Audrey P, Gasch
Publikováno v:
J Proteome Res
To cope with sudden changes in the external environment, the budding yeast Saccharomyces cerevisiae orchestrates a multi-faceted response that spans many levels of physiology. Several studies have interrogated the transcriptome response to endoplasmi
Autor:
Alejandro Wolf-Yadlin, Ernest Fraenkel, Rastislav Bodik, Dylan R. Cronin, Aaron McKenna, Saurabh Srivastava, Kirsten Beck, Matthew E. MacGilvray, Jasmin Fisher, Ali Sinan Köksal, Nathan D. Camp, Anthony Gitter
Publikováno v:
Elsevier
Cell Reports, Vol 24, Iss 13, Pp 3607-3618 (2018)
Cell reports
Cell Reports, Vol 24, Iss 13, Pp 3607-3618 (2018)
Cell reports
We present a method for automatically discovering signaling pathways from time-resolved phosphoproteomic data. The Temporal Pathway Synthesizer (TPS) algorithm uses constraint-solving techniques first developed in the context of formal verification t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ae4e639f51d02ab7df7f5bc01e6ea126
https://orcid.org/0000-0001-9249-8181
https://orcid.org/0000-0001-9249-8181
Autor:
Jeremiah D. Baldeck, Pedro Luiz Rosalen, Brendaliz Santiago, Cory J. Hubbard, Kathy Scott-Anne, Robert G. Quivey, James E. Payne, Elizabeth J. Grayhack, Shuba Gopal, Andrew S. Wolf, Robert E. Marquis, Matthew E. MacGilvray, Roberta C. Faustoferri
Publikováno v:
Molecular Oral Microbiology. 30:474-495
A collection of tagged deletion mutant strains was created in Streptococcus mutans UA159 to facilitate investigation of the aciduric capability of this oral pathogen. Gene-specific barcoded deletions were attempted in 1432 open reading frames (repres
Autor:
Evgenia Shishkova, Deborah Chasman, Joshua J. Coon, Anthony Gitter, Audrey P. Gasch, Michael Place, Matthew E. MacGilvray
Publikováno v:
PLoS Computational Biology, Vol 13, Iss 5, p e1006088 (2018)
PLoS Computational Biology
PLoS Computational Biology
Cells respond to stressful conditions by coordinating a complex, multi-faceted response that spans many levels of physiology. Much of the response is coordinated by changes in protein phosphorylation. Although the regulators of transcriptome changes
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6aee4ca2e7235d40a663fcbd4e8e4f97
Autor:
Zezhang T. Wen, K. Karuppaiah, Jessica K. Kajfasz, A. M. Derr, José A. Lemos, Robert G. Quivey, Matthew E. MacGilvray, Isamar Rivera-Ramos, Jonathon L. Baker, Roberta C. Faustoferri, Jacob P. Bitoun
Publikováno v:
Journal of Bacteriology. 196:2166-2177
NADH oxidase (Nox, encoded by nox ) is a flavin-containing enzyme used by the oral pathogen Streptococcus mutans to reduce diatomic oxygen to water while oxidizing NADH to NAD + . The critical nature of Nox is 2-fold: it serves to regenerate NAD + ,
Autor:
Kevin S. Myers, Justin Heilberger, Joshua J. Coon, Matthew E. MacGilvray, Nicholas M. Riley, Audrey P. Gasch, Mick McGee, Trey K. Sato
Publikováno v:
PLoS Genetics
PLoS Genetics, Vol 15, Iss 3, p e1008037 (2019)
PLoS Genetics, Vol 15, Iss 3, p e1008037 (2019)
Microbes can be metabolically engineered to produce biofuels and biochemicals, but rerouting metabolic flux toward products is a major hurdle without a systems-level understanding of how cellular flux is controlled. To understand flux rerouting, we i
Publikováno v:
Microbiology. 158:2133-2143
Streptococcus mutans, a causative agent of dental caries in humans, adapts to changing environmental conditions, such as pH, in order to survive and cause disease in the oral cavity. Previously, we have shown that S. mutans increases the proportion o