Pan-genome Analyses of the Species Salmonella enterica, and Identification of Genomic Markers Predictive for Species, Subspecies, and Serovar

Autor: Chad R. Laing, Matthew D. Whiteside, Victor P. J. Gannon

Publikováno v: Frontiers in Microbiology, Vol 8 (2017)

Food safety is a global concern, with upward of 2.2 million deaths due to enteric disease every year. Current whole-genome sequencing platforms allow routine sequencing of enteric pathogens for surveillance, and during outbreaks; however, a remaining

Externí odkaz: https://doaj.org/article/40d69e3a705341a8b7871a5b43b19e3f

InnateDB: facilitating systems‐level analyses of the mammalian innate immune response

Autor: David J Lynn, Geoffrey L Winsor, Calvin Chan, Nicolas Richard, Matthew R Laird, Aaron Barsky, Jennifer L Gardy, Fiona M Roche, Timothy H W Chan, Naisha Shah, Raymond Lo, Misbah Naseer, Jaimmie Que, Melissa Yau, Michael Acab, Dan Tulpan, Matthew D Whiteside, Avinash Chikatamarla, Bernadette Mah, Tamara Munzner, Karsten Hokamp, Robert E W Hancock, Fiona S L Brinkman

Publikováno v: Molecular Systems Biology, Vol 4, Iss 1, Pp 1-11 (2008)

Abstract Although considerable progress has been made in dissecting the signaling pathways involved in the innate immune response, it is now apparent that this response can no longer be productively thought of in terms of simple linear pathways. Inna

Externí odkaz: https://doaj.org/article/44fc53131f6c478a9b761a0f3e14dda7

Phylotyper: in silico predictor of gene subtypes

Autor: Matthew D. Whiteside, Chad R. Laing, Victor P. J. Gannon

Publikováno v: Bioinformatics

Summary Whole genome sequencing (WGS) is being adopted in public health for improved surveillance and outbreak analysis. In public health, subtyping has been used to infer phenotypes and distinguish bacterial strain groups. In silico tools that predi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2dd25ec8bb255596300cf68a4e90159e
https://doi.org/10.1093/bioinformatics/btx459

Control of soil phosphatase activities at millimeter scales in a mixed paper birch – Douglas-fir forest: The importance of carbon and nitrogen

Autor: Melanie D. Jones, Aaron M. Godin, Matthew D. Whiteside, Kiran K. Lidher

Publikováno v: Soil Biology and Biochemistry. 80:62-69

Organic P can serve as an important source of P for plants and microbes when mineralized by extracellular phosphatases. Substrate induction, end-product repression and/or resource limitation regulate activities of phosphatase in bulk soils. Yet, fact

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::d8fc64b3ace346dbb82acdab55f61599
https://doi.org/10.1016/j.soilbio.2014.09.022

Mycorrhizal Fungi Respond to Resource Inequality by Moving Phosphorus from Rich to Poor Patches across Networks

Autor: E. Toby Kiers, Anouk van 't Padje, Bram Elbers, Gijsbert D. A. Werner, Victor E.A. Caldas, Milenka Bakker, Bapu Vaitla, Marten Postma, Malin Klein, Matthew D. Whiteside, Simon E. Dupin, Ronald Noë, Thomas S. Shimizu, Stuart A. West, Gregory A. K. Wyatt, Mark A. Hink

Publikováno v: Current Biology
Current Biology, 29(12), 2043-2050.e8. Cell Press
Whiteside, M D, Werner, G D A, Caldas, V E A, van't Padje, A, Dupin, S E, Elbers, B, Bakker, M, Wyatt, G A K, Klein, M, Hink, M A, Postma, M, Vaitla, B, Noë, R, Shimizu, T S, West, S A & Kiers, E T 2019, ' Mycorrhizal Fungi Respond to Resource Inequality by Moving Phosphorus from Rich to Poor Patches across Networks ', Current Biology, vol. 29, no. 12, pp. 2043-2050.e8 . https://doi.org/10.1016/j.cub.2019.04.061
Current Biology, 29(12). Cell Press

Summary The world’s ecosystems are characterized by an unequal distribution of resources [1]. Trade partnerships between organisms of different species—mutualisms—can help individuals cope with such resource inequality [2, 3, 4]. Trade allows i

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::53b4c2b7620ea9f5db331a93c637cfff
http://europepmc.org/articles/PMC6584331