Zobrazeno 1 - 10
of 50
pro vyhledávání: '"Matthew C. Cowperthwaite"'
Autor:
Konstantinos Theofilatos, Aigli Korfiati, Seferina Mavroudi, Matthew C. Cowperthwaite, Max Shpak
Publikováno v:
BMC Medical Genomics, Vol 12, Iss 1, Pp 1-15 (2019)
Abstract Background Identifying molecular biomarkers characteristic of ischemic stroke has the potential to aid in distinguishing stroke cases from stroke mimicking symptoms, as well as advancing the understanding of the physiological changes that un
Externí odkaz:
https://doaj.org/article/981f8adb2b58456cab70b087a1c49086
Publikováno v:
PeerJ, Vol 4, p e1508 (2016)
We examined 55 technical sequencing replicates of Glioblastoma multiforme (GBM) tumors from The Cancer Genome Atlas (TCGA) to ascertain the degree of repeatability in calling single-nucleotide variants (SNVs). We used the same mutation-calling pipeli
Externí odkaz:
https://doaj.org/article/a725e0b2d8ab4ad39451b97a436f87ab
Autor:
Vishwanath R. Iyer, Max Shpak, Matthew C. Cowperthwaite, Adam R. Morris, Haridha Shivram, Anna M. Battenhouse, Amelia Weber Hall
Merged Tuxedo Suite output for tumor data, combining the cuffdiff and cuffnorm tables by unique ENSEMBL identifier
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3c89ddc770c1d3870a0bbe1a958be3c3
https://doi.org/10.1158/0008-5472.22418064
https://doi.org/10.1158/0008-5472.22418064
Autor:
Vishwanath R. Iyer, Max Shpak, Matthew C. Cowperthwaite, Adam R. Morris, Haridha Shivram, Anna M. Battenhouse, Amelia Weber Hall
Table S1: Output of ChromHMM and color key. Table S2: Enhancer counts. Table S3: Enhancer distribution. Table S4: Bivalent region counts.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2ea0caa0bae4c95195c0b12e6e9af7ef
https://doi.org/10.1158/0008-5472.22418052.v1
https://doi.org/10.1158/0008-5472.22418052.v1
Autor:
Vishwanath R. Iyer, Max Shpak, Matthew C. Cowperthwaite, Adam R. Morris, Haridha Shivram, Anna M. Battenhouse, Amelia Weber Hall
Glioblastoma multiforme (GBM) can be clustered by gene expression into four main subtypes associated with prognosis and survival, but enhancers and other gene-regulatory elements have not yet been identified in primary tumors. Here, we profiled six h
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3230cdd38131a7dc194cdb3a89ac4275
https://doi.org/10.1158/0008-5472.c.6510018
https://doi.org/10.1158/0008-5472.c.6510018
Autor:
Vishwanath R. Iyer, Max Shpak, Matthew C. Cowperthwaite, Adam R. Morris, Haridha Shivram, Anna M. Battenhouse, Amelia Weber Hall
Figure S1: Copy number alterations in GBM tumor genomes. Figure S2: Clustering of primary GBM tumors relative to GBM-derived cell lines. Figure S3: Gene expression over all 21 chromatin states in GBM tumors. Figure S4: Methylation over all identified
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2a4471dfea08b891516ab119f2b7bf3d
https://doi.org/10.1158/0008-5472.22418073.v1
https://doi.org/10.1158/0008-5472.22418073.v1
Autor:
Zoltan Nadasdy, Matthew C. Cowperthwaite, Anurekha Ramakrishnan, Christopher Fanale, Max Shpak
Publikováno v:
Stroke. 49:2851-2856
Background and Purpose— The increased use of novel oral anticoagulants (NOACs) to control atrial fibrillation is largely driven by the assumption that they are equally effective as warfarin at preventing ischemic stroke while putting patients at lo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::6614349c9cd95db7c7e16e7c4571c712
https://doi.org/10.1161/strokeaha.118.022636
https://doi.org/10.1161/strokeaha.118.022636
Autor:
Anna Battenhouse, Adam R. Morris, Matthew C. Cowperthwaite, Haridha Shivram, Amelia W. Hall, Max Shpak, Vishwanath R. Iyer
Publikováno v:
Cancer Research. 78:2463-2474
Glioblastoma multiforme (GBM) can be clustered by gene expression into four main subtypes associated with prognosis and survival, but enhancers and other gene-regulatory elements have not yet been identified in primary tumors. Here, we profiled six h
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5893285c0e2f8362d04c0bbb05928bb3
https://doi.org/10.1158/0008-5472.can-17-1724
https://doi.org/10.1158/0008-5472.can-17-1724
Publikováno v:
Journal of Neurosurgery: Spine. 27:391-396
OBJECTIVEThe authors comprehensively studied the recovery course and 1-year outcomes of early-crossover patients who were randomized to the nonoperative care arm of the Leiden–The Hague Spine Intervention Prognostic Study. The primary goal was to g
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fd29ef22bbd6ad7b2b7bc3deb92a0dc1
https://doi.org/10.3171/2017.2.spine16760
https://doi.org/10.3171/2017.2.spine16760
Autor:
Seferina Mavroudi, Matthew C. Cowperthwaite, Max Shpak, Aigli Korfiati, Konstantinos Theofilatos
Publikováno v:
BMC Medical Genomics
BMC Medical Genomics, Vol 12, Iss 1, Pp 1-15 (2019)
BMC Medical Genomics, Vol 12, Iss 1, Pp 1-15 (2019)
Background Identifying molecular biomarkers characteristic of ischemic stroke has the potential to aid in distinguishing stroke cases from stroke mimicking symptoms, as well as advancing the understanding of the physiological changes that underlie th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2358f0a11d48d762b018b4c4374b744c
http://europepmc.org/articles/PMC6686563
http://europepmc.org/articles/PMC6686563