Zobrazeno 1 - 10
of 52
pro vyhledávání: '"Matthew A. Schechter"'
Autor:
Iva Veseli, Michelle A. DeMers, Zachary S. Cooper, Matthew S. Schechter, Samuel Miller, Laura Weber, Christa B. Smith, Lidimarie T. Rodriguez, William F. Schroer, Matthew R. McIlvin, Paloma Z. Lopez, Makoto Saito, Sonya Dyhrman, A. Murat Eren, Mary Ann Moran, Rogier Braakman
Publikováno v:
Scientific Data, Vol 11, Iss 1, Pp 1-13 (2024)
Abstract The remarkable pace of genomic data generation is rapidly transforming our understanding of life at the micron scale. Yet this data stream also creates challenges for team science. A single microbe can have multiple versions of genome archit
Externí odkaz:
https://doaj.org/article/c2521d05ac3b40efa382ccc61cbce7a8
Autor:
Chiara Vanni, Matthew S Schechter, Silvia G Acinas, Albert Barberán, Pier Luigi Buttigieg, Emilio O Casamayor, Tom O Delmont, Carlos M Duarte, A Murat Eren, Robert D Finn, Renzo Kottmann, Alex Mitchell, Pablo Sánchez, Kimmo Siren, Martin Steinegger, Frank Oliver Gloeckner, Antonio Fernàndez-Guerra
Publikováno v:
eLife, Vol 11 (2022)
Genes of unknown function are among the biggest challenges in molecular biology, especially in microbial systems, where 40–60% of the predicted genes are unknown. Despite previous attempts, systematic approaches to include the unknown fraction into
Externí odkaz:
https://doaj.org/article/097108438cc24a7e974918ea90ebc056
Autor:
Emily C Fogarty, Matthew S Schechter, Karen Lolans, Madeline L. Sheahan, Iva Veseli, Ryan Moore, Evan Kiefl, Thomas Moody, Phoebe A Rice, Michael K Yu, Mark Mimee, Eugene B Chang, Sandra L Mclellan, Amy D Willis, Laurie E Comstock, A Murat Eren
Publikováno v:
bioRxiv
Plasmids are extrachromosomal genetic elements that often encode fitness enhancing features. However, many bacteria carry ‘cryptic’ plasmids that do not confer clear beneficial functions. We identified one such cryptic plasmid, pBI143, which is u
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3bb78fb064c191c93881f6df32683e7d
https://doi.org/10.1101/2023.03.25.534219
https://doi.org/10.1101/2023.03.25.534219
Autor:
Alexander S. Little, Isaac T. Younker, Matthew S. Schechter, Raphaël Méheust, Joshua Stemczynski, Kaylie Scorza, Paola Nol Bernardino, Michael W. Mullowney, Deepti Sharan, Emily Waligurski, Rita Smith, Ramanujam Ramanswamy, William Leiter, David Moran, Mary McMillin, Matthew A. Odenwald, Anthony T. Iavarone, Ashley M. Sidebottom, Anitha Sundararajan, Eric G. Pamer, A. Murat Eren, Samuel H. Light
Anaerobic respiration encompasses a major class of microbial energy metabolisms that employ reductases to respire different non-oxygen electron acceptors. Respiratory reductases play important roles in multiple geochemical cycles but their significan
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8fdb68f7e059fc8aeed415b8ca079938
https://doi.org/10.1101/2022.12.26.521950
https://doi.org/10.1101/2022.12.26.521950
Autor:
Manuel Liebeke, Frank Unfried, Stephanie Markert, Doerte Becher, Andreas Sichert, Matthew S. Schechter, Thomas Schweder, Christopher H. Corzett, Antonio Fernandez-Guerra, Jan-Hendrik Hehemann, Martin F. Polz
Publikováno v:
Nature Microbiology. 5:1026-1039
Brown algae are important players in the global carbon cycle by fixing carbon dioxide into 1 Gt of biomass annually, yet the fate of fucoidan—their major cell wall polysaccharide—remains poorly understood. Microbial degradation of fucoidans is sl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::76efb147a974f4cf8ebf5f8c37690e2e
https://doi.org/10.1038/s41564-020-0720-2
https://doi.org/10.1038/s41564-020-0720-2
Autor:
Chiara Vanni, Matthew S Schechter, Silvia G Acinas, Albert Barberán, Pier Luigi Buttigieg, Emilio O Casamayor, Tom O Delmont, Carlos M Duarte, A Murat Eren, Robert D Finn, Renzo Kottmann, Alex Mitchell, Pablo Sánchez, Kimmo Siren, Martin Steinegger, Frank Oliver Gloeckner, Antonio Fernàndez-Guerra
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b16bacc14618ea03d6750ad25b7be990
https://doi.org/10.7554/elife.67667.sa2
https://doi.org/10.7554/elife.67667.sa2
Autor:
Matthew S. Schechter, Chiara Vanni, Tom O. Delmont, A. M. Eren, Martin Steinegger, F. O. Gloeckner, Antonio Fernandez-Guerra
Genomes and metagenomes contain a considerable percentage of genes of unknown function, which are often excluded from downstream analyses limiting our understanding of the studied biological systems. To address this challenge, we developed AGNOSTOS,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::df1e13e376e774a3a34dfbd8a80c182d
https://doi.org/10.1101/2021.06.07.447314
https://doi.org/10.1101/2021.06.07.447314
Autor:
Matthew A Schechter, Michael K H Hsieh, Linda W Njoroge, J Will Thompson, Erik J Soderblom, Bryan J Feger, Constantine D Troupes, Kathleen A Hershberger, Olga R Ilkayeva, Whitney L Nagel, Gina P Landinez, Kishan M Shah, Virginia A Burns, Lucia Santacruz, Matthew D Hirschey, Matthew W Foster, Carmelo A Milano, M Arthur Moseley, Valentino Piacentino, Dawn E Bowles
Publikováno v:
PLoS ONE, Vol 9, Iss 8, p e104157 (2014)
The molecular differences between ischemic (IF) and non-ischemic (NIF) heart failure are poorly defined. A better understanding of the molecular differences between these two heart failure etiologies may lead to the development of more effective hear
Externí odkaz:
https://doaj.org/article/97d4172e41884dda9d397f4cdd8030bd
Autor:
Samuel E. Miller, Iva Veseli, Emily Fogarty, Andrea R. Watson, Isaac Fink, Matthew S. Schechter, Antonio Fernandez-Guerra, Mahmoud Yousef, Michael D. Lee, John M. Eppley, Evan Kiefl, Veronika Kivenson, Luke J. McKay, Jarrod J. Scott, A. Murat Eren, Jessika Fuessel, Lois Maignien, Alon Shaiber, Elaina D. Graham, Ryan M Moore, Amy D. Willis, Andreas Sjödin, Sarah L. R. Stevens, Quentin Clayssen, Bryan D. Merrill, Daniel Blankenberg, Elizabeth A. McDaniel, Rika E. Anderson, Jessica N. Pan, Antti Karkman, Özcan C. Esen, Florian Trigodet, Xabier Vázquez-Campos, Tom O. Delmont
Publikováno v:
Nat Microbiol
Nature Microbiology (2058-5276) (Springer Science and Business Media LLC), 2021-01, Vol. 6, N. 1, P. 3-6
Nature Microbiology (2058-5276) (Springer Science and Business Media LLC), 2021-01, Vol. 6, N. 1, P. 3-6
Big data abound in microbiology, but the workflows designed to enable researchers to interpret data can constrain the biological questions that can be asked. Five years after anvi'o was first published, this community-led multi-omics platform is matu
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8195345b6912543c672f426dc89368cf
http://hdl.handle.net/10138/332078
http://hdl.handle.net/10138/332078
Autor:
Robert D. Finn, Alex L. Mitchell, Kimmo Sirén, Emilio O. Casamayor, Carlos M. Duarte, Martin Steinegger, Pablo Sánchez, Antonio Fernandez-Guerra, Pier Luigi Buttigieg, A. Murat Eren, Frank Oliver Glöckner, Matthew S. Schechter, Chiara Vanni, Renzo Kottmann, Silvia G. Acinas, Tom O. Delmont, Albert Barberán
Genes of unknown function are among the biggest challenges in molecular biology, especially in microbial systems, where 40%-60% of the predicted genes are unknown. Despite previous attempts, systematic approaches to include the unknown fraction into
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::25781e771fd58e2283ee29536d104529
https://doi.org/10.1101/2020.06.30.180448
https://doi.org/10.1101/2020.06.30.180448