Zobrazeno 1 - 10
of 73
pro vyhledávání: '"Matteo Comin"'
Autor:
Yoshihiro Shibuya, Matteo Comin
Publikováno v:
BMC Bioinformatics, Vol 20, Iss S9, Pp 1-11 (2019)
Abstract Motivation Current NGS techniques are becoming exponentially cheaper. As a result, there is an exponential growth of genomic data unfortunately not followed by an exponential growth of storage, leading to the necessity of compression. Most o
Externí odkaz:
https://doaj.org/article/48fa9440040748458eed671f325d1753
Autor:
Jia Qian, Matteo Comin
Publikováno v:
BMC Bioinformatics, Vol 20, Iss S9, Pp 1-12 (2019)
Abstract Motivation Sequencing technologies allow the sequencing of microbial communities directly from the environment without prior culturing. Because assembly typically produces only genome fragments, also known as contigs, it is crucial to group
Externí odkaz:
https://doaj.org/article/78a2560ccbe64468bec37190bc06b415
Autor:
Andrzej Zielezinski, Hani Z. Girgis, Guillaume Bernard, Chris-Andre Leimeister, Kujin Tang, Thomas Dencker, Anna Katharina Lau, Sophie Röhling, Jae Jin Choi, Michael S. Waterman, Matteo Comin, Sung-Hou Kim, Susana Vinga, Jonas S. Almeida, Cheong Xin Chan, Benjamin T. James, Fengzhu Sun, Burkhard Morgenstern, Wojciech M. Karlowski
Publikováno v:
Genome Biology, Vol 20, Iss 1, Pp 1-18 (2019)
Abstract Background Alignment-free (AF) sequence comparison is attracting persistent interest driven by data-intensive applications. Hence, many AF procedures have been proposed in recent years, but a lack of a clearly defined benchmarking consensus
Externí odkaz:
https://doaj.org/article/a27249eeddf848c9a0542d0528e3605a
Publikováno v:
BMC Bioinformatics, Vol 19, Iss S15, Pp 29-38 (2018)
Abstract Background Spaced-seeds, i.e. patterns in which some fixed positions are allowed to be wild-cards, play a crucial role in several bioinformatics applications involving substrings counting and indexing, by often providing better sensitivity w
Externí odkaz:
https://doaj.org/article/573871807364488a99a4fa65e7ec9f48
Publikováno v:
Algorithms for Molecular Biology, Vol 13, Iss 1, Pp 1-11 (2018)
Abstract Background Patterns with wildcards in specified positions, namely spaced seeds, are increasingly used instead of k-mers in many bioinformatics applications that require indexing, querying and rapid similarity search, as they can provide bett
Externí odkaz:
https://doaj.org/article/80e27cd39483454283b2675a21915e67
Publikováno v:
BMC Genomics, Vol 18, Iss S10, Pp 69-79 (2017)
Abstract Background In recent years several different fields, such as ecology, medicine and microbiology, have experienced an unprecedented development due to the possibility of direct sequencing of microbioimic samples. Among problems that researche
Externí odkaz:
https://doaj.org/article/e839b162240e47ea952a9d898a7d5898
Autor:
Matteo Comin, Davide Verzotto
Publikováno v:
Algorithms, Vol 6, Iss 2, Pp 352-370 (2013)
In biology, the notion of degenerate pattern plays a central role for describing various phenomena. For example, protein active site patterns, like those contained in the PROSITE database, e.g., [FY ]DPC[LIM][ASG]C[ASG], are, in general, represented
Externí odkaz:
https://doaj.org/article/69b3fc78e9f0429daca5c0b4107c4056
Autor:
Margherita Cavattoni, Matteo Comin
Publikováno v:
Journal of Computational Biology.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2129607175ab84f11405e763169d797c
https://doi.org/10.1089/cmb.2022.0208
https://doi.org/10.1089/cmb.2022.0208
Publikováno v:
Journal of Computational Biology. 28:1052-1062
Current technologies allow the sequencing of microbial communities directly from the environment without prior culturing. One of the major problems when analyzing a microbial sample is to taxonomically annotate its reads to identify the species it co
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::15ec7679475576b978436bb9f5152dd5
https://doi.org/10.1089/cmb.2021.0270
https://doi.org/10.1089/cmb.2021.0270