26th Annual Computational Neuroscience Meeting (CNS*2017): Part 1

Autor: Sue Denham, Panayiota Poirazi, Erik De Schutter, Karl Friston, Ho Ka Chan, Thomas Nowotny, Dongqi Han, Sungho Hong, Sophie Rosay, Tanja Wernle, Alessandro Treves, Sarah Goethals, Romain Brette, Tomas Van Pottelbergh, Rodolphe Sepulchre, Alex D. Bird, Hermann Cuntz, Pedro J. Gonçalves, Jan-Matthis Lueckmann, Giacomo Bassetto, Marcel Nonnenmacher, Jakob H. Macke, Audrey J. Sederberg, Jason N. MacLean, Stephanie E. Palmer, Ulisse Ferrari, Christophe Gardella, Olivier Marre, Thierry Mora, Emina Ibrahimovic, Martin Müller, Jean-Pascal Pfister, Tushar Chauhan, Timothée Masquelier, Alexandre Montlibert, Benoit R. Cottereau, Moritz Helias, Jannis Schuecker, David Dahmen, Sven Goedeke, Alexandre Hyafil, Ainhoa Hermoso-Mendizabal, Pavel E. Rueda-Orozco, Santiago Jaramillo, David Robbe, Jaime de la Rocha, Marie Rooy, Fani Koukouli, David DiGregorio, Uwe Maskos, Boris Gutkin, Andrey Yu Verisokin, Darya V. Verveyko, Dmitry E. Postnov, Willy Wong, Omid Talakoub, Robert Chen, Milos Popovic, Dmitriy Lisitsyn, Eric Drebitz, Iris Grothe, Sunita Mandon, Andreas Kreiter, Udo Ernst, Peter A. Robinson, Xuelong Zhao, Kevin M. Aquino, John D. Griffiths, Grishma Mehta-Pandejee, Natasha Gabay, James MacLaurin, Somwrita Sarkar, Tim Kunze, Jens Haueisen, Thomas R. Knösche, Subutai Ahmad, Yuwei Cui, Marcus Lewis, Jeff Hawkins, Simona Olmi, Spase Petkoski, Fabrice Bartolomei, Maxime Guye, Viktor Jirsa, Hazem Toutounji, Daniel Durstewitz, Matteo Cantarelli, Adrian Quintana, Boris Marin, Matt Earnshaw, Padraig Gleeson, Robert Court, Robert McDougal, R. Angus Silver, Salvador Dura-Bernal, Stephen Larson, William W. Lytton, Giovanni Idili, Lorenzo Posani, Simona Cocco, Karel Ježek, Rémi Monasson

Publikováno v: BMC Neuroscience, Vol 18, Iss S1, Pp 1-14 (2017)

Externí odkaz: https://doaj.org/article/bd330ab82bcf4be09169d9b39d1bfad7

Author response: NetPyNE, a tool for data-driven multiscale modeling of brain circuits

Autor: Adrian Quintana, Facundo Rodriguez, Matteo Cantarelli, Salvador Dura-Bernal, Gordon M. Shepherd, Cliff C. Kerr, Padraig Gleeson, David J. Kedziora, Benjamin A. Suter, Michael L. Hines, Robert A. McDougal, Samuel A. Neymotin, George L. Chadderdon, William W. Lytton

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::665a6131e7e4738b18346a945761978d
https://doi.org/10.7554/elife.44494.016

NetPyNE: a tool for data-driven multiscale modeling of brain circuits

Autor: Robert A. McDougal, Facundo Rodriguez, Samuel A. Neymotin, Matteo Cantarelli, William W. Lytton, George L. Chadderdon, David J. Kedziora, Benjamin A. Suter, Michael Hines, Adrian Quintana, Padraig Gleeson, Cliff C. Kerr, Gordon M. Shepherd, Salvador Dura-Bernal

Publikováno v: eLife
eLife, Vol 8 (2019)

Biophysical modeling of neuronal networks helps to integrate and interpret rapidly growing and disparate experimental datasets at multiple scales. The NetPyNE tool (www.netpyne.org) provides both programmatic and graphical interfaces to develop data-

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f02651af95d8dcbc07bf9a71f8476eae
https://doi.org/10.1101/461137

Open Source Brain: a collaborative resource for visualizing, analyzing, simulating and developing standardized models of neurons and circuits

Autor: András Ecker, Eugenio Piasini, Robert C. Cannon, Stephen D. Larson, Rokas Stanislovas, Sharon M. Crook, Andrew P. Davison, William W. Lytton, Subhashini Sivagnanam, Matt Earnshaw, Sacha J. van Albada, Robert A. McDougal, N. Alex Cayco-Gajic, Adrian Quintana, Padraig Gleeson, Boris Marin, Justas Birgiolas, Giovanni Idili, Sergio Solinas, Salvador Dura-Bernal, Matteo Cantarelli, Amitava Majumdar, R. Angus Silver, Michael L. Hines, Werner Van Geit

Computational models are powerful tools for investigating brain function in health and disease. However, biologically detailed neuronal and circuit models are complex and implemented in a range of specialized languages, making them inaccessible and o

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b8a8c6291ff8d025174ef2a61e891a1c
https://doi.org/10.1101/229484

Toward community standards and software for whole-cell modeling

Autor: Vasundra Touré, Matteo Cantarelli, Argyris Zardilis, Bertrand Moreau, Arthur P. Goldberg, Milenko Tokic, Pınar Pir, Dagmar Waltemath, Kieran Smallbone, Jens Hahn, Kambiz Baghalian, Daewon Lee, Naveen K. Aranganathan, Vijayalakshmi Chelliah, Arne T. Bittig, Namrata Tomar, Anna Zhukova, Florian Wendland, Marcus Krantz, Yan Zhu, Mahesh C. Sharma, Wolfram Liebermeister, Frank Bergmann, Joseph Cursons, Rafael S. Costa, Matthias König, Leandro Watanabe, Pedro Mendes, Natalie J. Stanford, James T. Yurkovich, Falk Schreiber, Harold F. Gómez, J. Kyle Medley, Martin Scharm, Vincent Knight-Schrijver, Denis Kazakiewicz, Ilya Kiselev, Jannis Uhlendorf, Daniel Alejandro Priego-Espinosa, Chris J. Myers, Sucheendra K. Palaniappan, Hojjat Naderi-Meshkin, Michael Hucka, Thawfeek M. Varusai, Nikita Mandrik, Markus Wolfien, Begum Alaybeyoglu, Paulo E. Pinto Burke, Daniel Federico Hernandez Gardiol, Audald Lloret-Villas, Tom Theile, Tuure Hameri, Christian Knüpfer, Jonathan R. Karr, Je-Hoon Song, Yin Hoon Chew, Tobias Czauderna

Publikováno v: IEEE transactions on bio-medical engineering

Objective: Whole-cell (WC) modeling is a promising tool for biological research, bioengineering, and medicine. However, substantial work remains to create accurate comprehensive models of complex cells. Methods: We organized the 2015 Whole-Cell Model

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d98a6b1a1a6703599a5ab9a1f9682138