Zobrazeno 1 - 10
of 51
pro vyhledávání: '"Mathieu Fourment"'
Autor:
Seong-Hwan Jun, Hassan Nasif, Chris Jennings-Shaffer, David H Rich, Anna Kooperberg, Mathieu Fourment, Cheng Zhang, Marc A Suchard, Frederick A Matsen
Publikováno v:
Algorithms for Molecular Biology, Vol 18, Iss 1, Pp 1-18 (2023)
Abstract Bayesian phylogenetics is a computationally challenging inferential problem. Classical methods are based on random-walk Markov chain Monte Carlo (MCMC), where random proposals are made on the tree parameter and the continuous parameters simu
Externí odkaz:
https://doaj.org/article/9f469f79a65e4381aa0e64291e29bdde
Autor:
Priyanka Hastak, Mathieu Fourment, Aaron E. Darling, Thomas Gottlieb, Elaine Cheong, John Merlino, Garry S. A. Myers, Steven P. Djordjevic, Piklu Roy Chowdhury
Publikováno v:
Emerging Microbes and Infections, Vol 9, Iss 1, Pp 1780-1792 (2020)
ABSTRACTThe H30Rx subclade of Escherichia coli ST131 is a clinically important, globally dispersed pathogenic lineage that typically displays resistance to fluoroquinolones and extended spectrum β-lactams. Isolates EC233 and EC234, variants of ST131
Externí odkaz:
https://doaj.org/article/a98f081aa3ce498eb418609a94cf5145
Autor:
Mathieu Fourment, Aaron E. Darling
Publikováno v:
PeerJ, Vol 7, p e8272 (2019)
Recent advances in statistical machine learning techniques have led to the creation of probabilistic programming frameworks. These frameworks enable probabilistic models to be rapidly prototyped and fit to data using scalable approximation methods su
Externí odkaz:
https://doaj.org/article/feb9c5415b9242268df4489e681f9b01
Publikováno v:
BMC Evolutionary Biology, Vol 17, Iss 1, Pp 1-12 (2017)
Abstract Background Wild birds are the major reservoir hosts for influenza A viruses (AIVs) and have been implicated in the emergence of pandemic events in livestock and human populations. Understanding how AIVs spread within and across continents is
Externí odkaz:
https://doaj.org/article/175bcdeb230d435e9cf377d29d166f61
Autor:
Remco Bouckaert, Timothy G Vaughan, Joëlle Barido-Sottani, Sebastián Duchêne, Mathieu Fourment, Alexandra Gavryushkina, Joseph Heled, Graham Jones, Denise Kühnert, Nicola De Maio, Michael Matschiner, Fábio K Mendes, Nicola F Müller, Huw A Ogilvie, Louis du Plessis, Alex Popinga, Andrew Rambaut, David Rasmussen, Igor Siveroni, Marc A Suchard, Chieh-Hsi Wu, Dong Xie, Chi Zhang, Tanja Stadler, Alexei J Drummond
Publikováno v:
PLoS Computational Biology, Vol 15, Iss 4, p e1006650 (2019)
Elaboration of Bayesian phylogenetic inference methods has continued at pace in recent years with major new advances in nearly all aspects of the joint modelling of evolutionary data. It is increasingly appreciated that some evolutionary questions ca
Externí odkaz:
https://doaj.org/article/a8f0a0f9405c41538efbc3deca7a85e2
Autor:
Mathieu Fourment, Aaron E. Darling
Publikováno v:
PeerJ, Vol 6, p e5140 (2018)
Time-resolved phylogenetic methods use information about the time of sample collection to estimate the rate of evolution. Originally, the models used to estimate evolutionary rates were quite simple, assuming that all lineages evolve at the same rate
Externí odkaz:
https://doaj.org/article/99834358397c43b9af7bae01da64755d
Autor:
Karthik Shanmuganatham, Mohammed M. Feeroz, Lisa Jones-Engel, Gavin J.D. Smith, Mathieu Fourment, David Walker, Laura McClenaghan, S.M. Rabiul Alam, M. Kamrul Hasan, Patrick Seiler, John Franks, Angie Danner, Subrata Barman, Pamela McKenzie, Scott Krauss, Richard J. Webby, Robert G. Webster
Publikováno v:
Emerging Infectious Diseases, Vol 19, Iss 9, Pp 1393-1402 (2013)
Human infection with avian influenza A(H9N2) virus was identified in Bangladesh in 2011. Surveillance for influenza viruses in apparently healthy poultry in live-bird markets in Bangladesh during 2008–2011 showed that subtype H9N2 viruses are isola
Externí odkaz:
https://doaj.org/article/e436228d08054d18b92cad8239f18f01
Autor:
Kirsten I Bos, Alexander Herbig, Jason Sahl, Nicholas Waglechner, Mathieu Fourment, Stephen A Forrest, Jennifer Klunk, Verena J Schuenemann, Debi Poinar, Melanie Kuch, G Brian Golding, Olivier Dutour, Paul Keim, David M Wagner, Edward C Holmes, Johannes Krause, Hendrik N Poinar
Publikováno v:
eLife, Vol 5 (2016)
The 14th–18th century pandemic of Yersinia pestis caused devastating disease outbreaks in Europe for almost 400 years. The reasons for plague’s persistence and abrupt disappearance in Europe are poorly understood, but could have been due to eithe
Externí odkaz:
https://doaj.org/article/6d899b53eef5493fa06954ba09d4892a
Autor:
Philippe Buchy, Mathieu Fourment, Sek Mardy, San Sorn, Davun Holl, Sowath Ly, Sirenda Vong, Vincent Enouf, J.S. Malik Peiris, Silvie van der Werf
Publikováno v:
Emerging Infectious Diseases, Vol 15, Iss 10, Pp 1641-1644 (2009)
To determine the origin of influenza A virus (H5N1) epizootics in Cambodia, we used maximum-likelihood and Bayesian methods to analyze the genetic sequences of subtype H5N1 strains from Cambodia and neighboring areas. Poultry movements, rather than r
Externí odkaz:
https://doaj.org/article/8ba80254f40e476cba6394ef360c1e22
Autor:
Dhanasekaran Vijaykrishna, Edward C Holmes, Udayan Joseph, Mathieu Fourment, Yvonne CF Su, Rebecca Halpin, Raphael TC Lee, Yi-Mo Deng, Vithiagaran Gunalan, Xudong Lin, Timothy B Stockwell, Nadia B Fedorova, Bin Zhou, Natalie Spirason, Denise Kühnert, Veronika Bošková, Tanja Stadler, Anna-Maria Costa, Dominic E Dwyer, Q Sue Huang, Lance C Jennings, William Rawlinson, Sheena G Sullivan, Aeron C Hurt, Sebastian Maurer-Stroh, David E Wentworth, Gavin JD Smith, Ian G Barr
Publikováno v:
eLife, Vol 4 (2015)
A complex interplay of viral, host, and ecological factors shapes the spatio-temporal incidence and evolution of human influenza viruses. Although considerable attention has been paid to influenza A viruses, a lack of equivalent data means that an in
Externí odkaz:
https://doaj.org/article/19dc5c8cf17240d29306849d95dc85f3