ALFA: annotation landscape for aligned reads

Autor: Mathieu Bahin, Benoit F. Noël, Valentine Murigneux, Charles Bernard, Leila Bastianelli, Hervé Le Hir, Alice Lebreton, Auguste Genovesio

Publikováno v: BMC Genomics, Vol 20, Iss 1, Pp 1-11 (2019)

Abstract Background The last 10 years have seen the rise of countless functional genomics studies based on Next-Generation Sequencing (NGS). In the vast majority of cases, whatever the species, whatever the experiment, the two first steps of data ana

Externí odkaz: https://doaj.org/article/c11072d8abec4b54b238ce8d6fed01fc

Table S2 from Discovery of Human-Similar Gene Fusions in Canine Cancers

Autor: Catherine André, Benoît Hédan, Thomas Derrien, Arnaud Le Goff, Thierry Guillaudeux, Benoit Hennuy, David Gilot, Laura Bachelot, Florian Cabillic, Laurence Cornevin, Christophe Hitte, Catherine Thieblemont, Edouard Cadieu, Valentin Wucher, Audrey Rousseau, Nadine Botherel, Jean-Michel Coindre, Clotilde De Brito, Jérôme Abadie, Laetitia Lagoutte, Mathieu Bahin, Mélanie Rault, Ronan Ulvé

Primers used for validation of the canine gene fusions.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7e5b2d2b867e71fa4b92c97f7959272f
https://doi.org/10.1158/0008-5472.22418496

High-throughput droplet-based analysis of influenza A virus genetic reassortment by single-virus RNA sequencing

Autor: Kuang-Yu Chen, Jayaprakash Karuppusamy, Mary B. O’Neill, Vaitea Opuu, Mathieu Bahin, Sophie Foulon, Pablo Ibanez, Lluis Quintana-Murci, Tatsuhiko Ozawa, Sylvie van der Werf, Philippe Nghe, Nadia Naffakh, Andrew Griffiths, Catherine Isel

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America
Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (6), pp.e2211098120. ⟨10.1073/pnas.2211098120⟩

International audience; The segmented RNA genome of influenza A viruses (IAVs) enables viral evolution through genetic reassortment after multiple IAVs coinfect the same cell, leading to viruses harboring combinations of eight genomic segments from d

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e1a6151b328050a32ee6cb40589637fd
https://doi.org/10.1073/pnas.2211098120

DNA Damage-p53/P21 Response Contributes to Ependymal Cell Development

Autor: Frédéric Causeret, Vincent Géli, Ayush Srivastava, Alice Meunier, Nathalie Spassky, Marion Faucourt, Marielle Breau, Corinne Blugeon, Matthieu X Moreau, Mathieu Bahin, Aurélien Fortoul, Gonzalo Ortiz Álvarez, Benoit Bouloudi

Publikováno v: SSRN Electronic Journal.

Multiciliated Ependymal Cells and Adult Neural Stem Cells are components of the adult neurogenic niche, essential for brain homeostasis. These cells share a common glial cell lineage regulated by the Geminin family members Geminin and GemC1/Mcidas. E

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::5b3ef0a9b6956461ffef3bd582edd0c9
https://doi.org/10.2139/ssrn.3848111

ALFA: annotation landscape for aligned reads

Autor: Alice Lebreton, Charles Bernard, Benoît Noël, Leïla Bastianelli, Mathieu Bahin, Auguste Genovesio, Valentine Murigneux, Hervé Le Hir

Publikováno v: BMC Genomics
BMC Genomics, BioMed Central, 2019, 20 (250), ⟨10.1186/s12864-019-5624-2⟩
BMC Genomics, 2019, 20 (250), pp.1-11. ⟨10.1186/s12864-019-5624-2⟩
BMC Genomics (20), 1-11. (2019)
BMC Genomics, BioMed Central, 2019, 20 (250), pp.1-11. ⟨10.1186/s12864-019-5624-2⟩
BMC Genomics, Vol 20, Iss 1, Pp 1-11 (2019)

Background The last 10 years have seen the rise of countless functional genomics studies based on Next-Generation Sequencing (NGS). In the vast majority of cases, whatever the species, whatever the experiment, the two first steps of data analysis con

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8e5134e3e4b76c2aef6844487ed1b258
https://hal-ens.archives-ouvertes.fr/hal-02084432