Zobrazeno 1 - 10
of 32
pro vyhledávání: '"Mathias Walzer"'
Autor:
Mathias Walzer, David García-Seisdedos, Ananth Prakash, Paul Brack, Peter Crowther, Robert L. Graham, Nancy George, Suhaib Mohammed, Pablo Moreno, Irene Papatheodorou, Simon J. Hubbard, Juan Antonio Vizcaíno
Publikováno v:
Scientific Data, Vol 9, Iss 1, Pp 1-15 (2022)
Abstract The number of mass spectrometry (MS)-based proteomics datasets in the public domain keeps increasing, particularly those generated by Data Independent Acquisition (DIA) approaches such as SWATH-MS. Unlike Data Dependent Acquisition datasets,
Externí odkaz:
https://doaj.org/article/a546f8015278497faae0aa68412d02c4
Autor:
Markus W. Löffler, Christopher Mohr, Leon Bichmann, Lena Katharina Freudenmann, Mathias Walzer, Christopher M. Schroeder, Nico Trautwein, Franz J. Hilke, Raphael S. Zinser, Lena Mühlenbruch, Daniel J. Kowalewski, Heiko Schuster, Marc Sturm, Jakob Matthes, Olaf Riess, Stefan Czemmel, Sven Nahnsen, Ingmar Königsrainer, Karolin Thiel, Silvio Nadalin, Stefan Beckert, Hans Bösmüller, Falko Fend, Ana Velic, Boris Maček, Sebastian P. Haen, Luigi Buonaguro, Oliver Kohlbacher, Stefan Stevanović, Alfred Königsrainer, HEPAVAC Consortium, Hans-Georg Rammensee
Publikováno v:
Genome Medicine, Vol 11, Iss 1, Pp 1-16 (2019)
Abstract Background Although mutated HLA ligands are considered ideal cancer-specific immunotherapy targets, evidence for their presentation is lacking in hepatocellular carcinomas (HCCs). Employing a unique multi-omics approach comprising a neoepito
Externí odkaz:
https://doaj.org/article/09823055f7a9475c93077f42081ab4b7
Publikováno v:
BMC Bioinformatics, Vol 18, Iss 1, Pp 1-7 (2017)
Abstract Background Immunoinformatics has become a crucial part in biomedical research. Yet many immunoinformatics tools have command line interfaces only and can be difficult to install. Web-based immunoinformatics tools, on the other hand, are diff
Externí odkaz:
https://doaj.org/article/9fab5cf4768f4516bf75f1b85bf1b9b8
Autor:
Juan Antonio Vizcaíno, Mathias Walzer, Rafael C. Jiménez, Wout Bittremieux, David Bouyssié, Christine Carapito, Fernando Corrales, Myriam Ferro, Albert J.R. Heck, Peter Horvatovich, Martin Hubalek, Lydie Lane, Kris Laukens, Fredrik Levander, Frederique Lisacek, Petr Novak, Magnus Palmblad, Damiano Piovesan, Alfred Pühler, Veit Schwämmle, Dirk Valkenborg, Merlijn van Rijswijk, Jiri Vondrasek, Martin Eisenacher, Lennart Martens, Oliver Kohlbacher
Publikováno v:
F1000Research, Vol 6 (2017)
Computational approaches have been major drivers behind the progress of proteomics in recent years. The aim of this white paper is to provide a framework for integrating computational proteomics into ELIXIR in the near future, and thus to broaden the
Externí odkaz:
https://doaj.org/article/320306b83ea146da81c7a3d49d65d155
Autor:
Eric W. Deutsch, Juan Antonio Vizcaíno, Andrew R. Jones, Pierre-Alain Binz, Henry Lam, Joshua Klein, Wout Bittremieux, Yasset Perez-Riverol, David L. Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D. Mak, Shin Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy Carver, Benjamin Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C. E. Tosatto, Sandra E. Orchard
Publikováno v:
Journal of proteome research
JOURNAL OF PROTEOME RESEARCH
JOURNAL OF PROTEOME RESEARCH
The Human Proteome Organization (HUPO) Proteomics Standards Initiative (PSI) has been successfully developing guidelines, data formats, and controlled vocabularies (CVs) for the proteomics community and other fields supported by mass spectrometry sin
Autor:
Eric W Deutsch, Juan Antonio Vizcaíno, Andrew R Jones, Pierre-Alain Binz, Henry Lam, Joshua Klein, Wout Bittremieux, Yasset Perez-Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy Carver, Benjamin Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio CE Tosatto, Sandra E Orchard
The Human Proteome Organization (HUPO) Proteomics Standards Initiative (PSI) has been successfully developing guidelines, data formats, and controlled vocabularies (CVs) for the proteomics community and other fields supported by mass spectrometry sin
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ba7caa58ce0d862afd310bf15929bc27
https://doi.org/10.26434/chemrxiv-2022-ksqg1
https://doi.org/10.26434/chemrxiv-2022-ksqg1
Autor:
Oliver Kohlbacher, Ralf Ficner, Mathias Walzer, Timo Sachsenberg, Tjeerd M. H. Dijkstra, Eugen Netz, Henning Urlaub, Thomas Monecke, Olexandr Dybkov, Lukas Zimmermann
Publikováno v:
Mol Cell Proteomics
Cross-linking MS (XL-MS) has been recognized as an effective source of information about protein structures and interactions. In contrast to regular peptide identification, XL-MS has to deal with a quadratic search space, where peptides from every pr
Autor:
John C. Marioni, Jana Eliasova, Alfonso Munoz-Pomer, Upendra Kumbham, David García-Seisdedos, Sunita Kumari, Zhichiao Miao, Doreen Ware, Marcela K. Tello-Ruiz, Anja Füllgrabe, Sarah A. Teichmann, Tony Burdett, Suhaib Mohammed, Mathias Walzer, David Osumi-Sutherland, Juan Antonio Vizcaíno, Kerstin B. Meyer, Natassja Bush, Jonathan R. Manning, Lingyun Zhao, Deepti J. Kundu, Laura Clarke, Irene Papatheodorou, Alvis Brazma, Pablo Moreno, Haider Iqbal, Nancy George, Ananth Prakash, Silvie Fexova, Shengbo Wang, Andrey Solovyev, Martijn C. Nawijn, Yalan Bi, Mark J. Arends
Publikováno v:
Nucleic Acid Research
Nucleic Acids Research, 50(D1):gkab1030, 129-140. Oxford University Press
Moreno, P, Fexova, S, George, N, Manning, J R, Miao, Z, Mohammed, S, Muñoz-pomer, A, Fullgrabe, A, Bi, Y, Bush, N, Iqbal, H, Kumbham, U, Solovyev, A, Zhao, L, Prakash, A, García-seisdedos, D, Kundu, D, Wang, S, Walzer, M, Clarke, L, Osumi-sutherland, D, Tello-ruiz, M, Kumari, S, Ware, D, Eliasova, J, Arends, M, Nawijn, M, Meyer, K, Burdett, T, Marioni, J, Teichmann, S, Vizcaíno, J, Brazma, A & Papatheodorou, I 2021, ' Expression Atlas update : gene and protein expression in multiple species ', Nucleic Acids Research, vol. 50, no. D1, pp. D129-D140 . https://doi.org/10.1093/nar/gkab1030
Nucleic Acids Research
Nucleic Acids Research, 50(D1):gkab1030, 129-140. Oxford University Press
Moreno, P, Fexova, S, George, N, Manning, J R, Miao, Z, Mohammed, S, Muñoz-pomer, A, Fullgrabe, A, Bi, Y, Bush, N, Iqbal, H, Kumbham, U, Solovyev, A, Zhao, L, Prakash, A, García-seisdedos, D, Kundu, D, Wang, S, Walzer, M, Clarke, L, Osumi-sutherland, D, Tello-ruiz, M, Kumari, S, Ware, D, Eliasova, J, Arends, M, Nawijn, M, Meyer, K, Burdett, T, Marioni, J, Teichmann, S, Vizcaíno, J, Brazma, A & Papatheodorou, I 2021, ' Expression Atlas update : gene and protein expression in multiple species ', Nucleic Acids Research, vol. 50, no. D1, pp. D129-D140 . https://doi.org/10.1093/nar/gkab1030
Nucleic Acids Research
The EMBL-EBI Expression Atlas is an added value knowledge base that enables researchers to answer the question of where (tissue, organism part, developmental stage, cell type) and under which conditions (disease, treatment, gender, etc) a gene or pro
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6df3657a122c18e66f9e4d8b29f9d492
https://www.repository.cam.ac.uk/handle/1810/333881
https://www.repository.cam.ac.uk/handle/1810/333881
Autor:
Lennart Martens, Yasset Perez-Riverol, Harald Barsnes, Timo Sachsenberg, Niels Hulstaert, Mathias Walzer, Jim Shofstahl
Publikováno v:
J Proteome Res
Journal of Proteome Research
537–542
Journal of Proteome Research
537–542
The field of computational proteomics is approaching the big data age, driven both by a continuous growth in the number of samples analyzed per experiment as well as by the growing amount of data obtained in each analytical run. In order to process t
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2051
In any analytical discipline, data analysis reproducibility is closely interlinked with data quality. In this book chapter focused on mass spectrometry-based proteomics approaches, we introduce how both data analysis reproducibility and data quality