glbase: a framework for combining, analyzing and displaying heterogeneous genomic and high-throughput sequencing data

Autor: Andrew Paul Hutchins, Ralf Jauch, Mateusz Dyla, Diego Miranda-Saavedra

Publikováno v: Cell Regeneration, Vol 3, Iss 1 (2014)

Genomic datasets and the tools to analyze them have proliferated at an astonishing rate. However, such tools are often poorly integrated with each other: each program typically produces its own custom output in a variety of non-standard file formats.

Externí odkaz: https://doaj.org/article/2be3b0ef84934491aff883468c27b9ae

Structure and Mechanism of P-Type ATPase Ion Pumps

Autor: Mateusz Dyla, Poul Nissen, Magnus Kjaergaard, Hanne Poulsen

Publikováno v: Dyla, M, Kjærgaard, M, Poulsen, H & Nissen, P 2020, ' Structure and Mechanism of P-Type ATPase Ion Pumps ', Annual Review of Biochemistry, vol. 89, pp. 583-603 . https://doi.org/10.1146/annurev-biochem-010611-112801

P-type ATPases are found in all kingdoms of life and constitute a wide range of cation transporters, primarily for H+, Na+, K+, Ca2+, and transition metal ions such as Cu(I), Zn(II), and Cd(II). They have been studied through a wide range of techniqu

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::669051c51d2cc4e4d48f49c2e5fc340c
https://doi.org/10.1146/annurev-biochem-010611-112801

The Crystal Structure of the Ca2+-ATPase 1 from Listeria monocytogenes reveals a Pump Primed for Dephosphorylation

Autor: C. Neumann, Poul Nissen, Sara Basse Hansen, Mateusz Dyla, Magnus Kjaergaard, Esben M. Quistgaard, Jacob Andersen

Publikováno v: Hansen, S B, Dyla, M, Neumann, C, Quistgaard, E M H, Andersen, J L, Kjaergaard, M & Nissen, P 2021, ' The Crystal Structure of the Ca 2+-ATPase 1 from Listeria monocytogenes reveals a Pump Primed for Dephosphorylation ', Journal of Molecular Biology, vol. 433, no. 16, 167015 . https://doi.org/10.1016/j.jmb.2021.167015
Journal of molecular biology 433(16), 167015 (2021). doi:10.1016/j.jmb.2021.167015

Journal of molecular biology 433(16), 167015 (2021). doi:10.1016/j.jmb.2021.167015
Many bacteria export intracellular calcium using active transporters homologous to the sarco/endoplasmic reticulum Ca$^{2+}$-ATPase (SERCA). Here we present three

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::10d984167e0419d960771583d5accdfc
https://pure.au.dk/portal/da/publications/the-crystal-structure-of-the-ca2atpase-1-from-listeria-monocytogenes-reveals-a-pump-primed-for-dephosphorylation(0f720282-27dd-4d8f-8b0c-3ac08bac9f0b).html

Intrinsic disorder in protein kinase A anchoring proteins signaling complexes

Autor: Mateusz Dyla, Magnus Kjaergaard

Publikováno v: Dyla, M & Kjaergaard, M 2021, Intrinsic disorder in protein kinase A anchoring proteins signaling complexes . in V N Uversky & V N Uversky (eds), Dancing Protein Clouds : Intrinsically Disordered Proteins in the Norm and Pathology, Part C . Elsevier, Amsterdam, Progress in Molecular Biology and Translational Science, vol. 183, pp. 271-294 . https://doi.org/10.1016/bs.pmbts.2021.06.005
Progress in Molecular Biology and Translational Science ISBN: 9780323852999

Protein kinase A (PKA) is regulated by a diverse class of anchoring proteins known as AKAPs that target PKA to subsets of its activators and substrates. Recently, it was reported that PKA can remain bound to its regulatory subunit after activation in

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e4382982f801a5af8e2137dfe488e547
https://pure.au.dk/portal/da/publications/intrinsic-disorder-in-protein-kinase-a-anchoring-proteins-signaling-complexes(b1232825-a697-40c1-96d6-84fc1a886279).html

A Michaelis-Menten Equation for Intra-Complex Kinase Reactions

Autor: Magnus Kjaergaard, Mateusz Dyla

Publikováno v: Biophysical Journal. 120:305a-306a

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::4dbe079abb1e826e99e316285a76a482
https://doi.org/10.1016/j.bpj.2020.11.1945