Zobrazeno 1 - 10
of 13
pro vyhledávání: '"Matej Troják"'
Publikováno v:
PLoS ONE, Vol 15, Iss 9, p e0238838 (2020)
Computational systems biology provides multiple formalisms for modelling of biochemical processes among which the rule-based approach is one of the most suitable. Its main advantage is a compact and precise mechanistic description of complex processe
Externí odkaz:
https://doaj.org/article/ad450976c6ec4501aa16c4a88eeaf377
Publikováno v:
Biosystems. 225:104843
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3af1ef3133edf53749ecd839e17c6880
https://doi.org/10.1016/j.biosystems.2023.104843
https://doi.org/10.1016/j.biosystems.2023.104843
Publikováno v:
Computational Methods in Systems Biology ISBN: 9783031150333
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::48b5ac7325a7dcf4579bd4098137e94c
https://doi.org/10.1007/978-3-031-15034-0_17
https://doi.org/10.1007/978-3-031-15034-0_17
Publikováno v:
Journal of Open Source Software. 7:4494
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::7dec111173c5eac6f92817b75dcffdc0
https://doi.org/10.21105/joss.04494
https://doi.org/10.21105/joss.04494
Publikováno v:
Computational Methods in Systems Biology ISBN: 9783030603267
CMSB
CMSB
eBCSgen is a tool for development and analysis of models written in Biochemical Space Language (BCSL). BCSL is a rule-based language for biological systems designed to combine compact description with a specific level of abstraction which makes it ac
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::a8efbc74a864fcebbeaf528f5ec960ce
https://doi.org/10.1007/978-3-030-60327-4_20
https://doi.org/10.1007/978-3-030-60327-4_20
Publikováno v:
Lecture Notes in Computer Science ISBN: 9783030557539
NFM
NFM
We introduce the Quantitative Biochemical Space Language, a rule-based language for a compact modelling of probabilistic behaviour of complex parameter-dependent biological systems. Application of rules is governed by an associated parametrised rate
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4a4f9d6eb91846fe0f5cd5a0823a908c
https://doi.org/10.1007/978-3-030-55754-6_3
https://doi.org/10.1007/978-3-030-55754-6_3
Autor:
Tomáš Vejpustek, Martin Demko, Aleš Pejznoch, Vojtěch Brůža, David Šafránek, Samuel Pastva, Luboš Brim, Jan Papoušek, Matej Troják
Publikováno v:
Computational Methods in Systems Biology ISBN: 9783030313036
CMSB
CMSB
In our previous work, we have introduced an extension of signal temporal logic called STL* that allows expressing freezing of values referred within temporal operators. The extension is important especially to express several aspects of signals that
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::160b35d28a4067718c118a7236abcb81
https://doi.org/10.1007/978-3-030-31304-3_26
https://doi.org/10.1007/978-3-030-31304-3_26
Publikováno v:
Electronic Notes in Theoretical Computer Science. 326:27-49
Biochemical Space (BCS) has been introduced as a semi-formal notation for reaction networks of biological processes. It provides a concise mapping of mathematical models to their biological description established at a desired level of abstraction. I
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1b2c4942416c42be1a2d35e3cc5075ed
Autor:
David Šafránek, Luboš Brim, Jakub Šalagovič, Samuel Pastva, Matej Troják, Nikola Beneš, Jan Cerveny
© 2018 IEEE. Complex dynamics arising in biological systems can be characterised by various kinds of attractors. To that end, the task of determining attractors becomes important in modern systems analysis. Biological systems are typically formalise
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2f208f50c044c97461dfad8777709092
https://hdl.handle.net/10453/133862
https://hdl.handle.net/10453/133862
Autor:
Jan Červený, Jakub Šalagovič, Františka Romanovská, Matej Troják, David Šafránek, Jakub Hrabec
Publikováno v:
Computational Methods in Systems Biology ISBN: 9783319451763
CMSB
CMSB
E-cyanobacterium.org is an online platform providing tools for public sharing, annotation, analysis, and visualization of dynamical models and wet-lab experiments related to cyanobacteria. The platform is unique in integrating abstract mathematical m
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::355b5ad7df03bbd4262d9480c2669fb2
https://doi.org/10.1007/978-3-319-45177-0_20
https://doi.org/10.1007/978-3-319-45177-0_20