Comparison of fast Fourier transform infrared spectroscopy biotyping with whole genome sequencing-based genotyping in common nosocomial pathogens

Autor: Teng, Ayza S. J., Habermehl, Patrick E., van Houdt, Robin, de Jong, Menno D., van Mansfeld, Rosa, Matamoros, S. bastien P. F., Spijkerman, Ingrid J. B., van Meer, Maurits P. A., Visser, Caroline E.

Publikováno v: Teng, A S J, Habermehl, P E, van Houdt, R, de Jong, M D, van Mansfeld, R, Matamoros, S B P F, Spijkerman, I J B, van Meer, M P A & Visser, C E 2022, ' Comparison of fast Fourier transform infrared spectroscopy biotyping with whole genome sequencing-based genotyping in common nosocomial pathogens ', Analytical and Bioanalytical Chemistry, vol. 414, no. 24, pp. 7179-7189 . https://doi.org/10.1007/s00216-022-04270-6
Analytical and bioanalytical chemistry, 414(24), 7179-7189. Springer Verlag
Analytical and Bioanalytical Chemistry, 414(24), 7179-7189. Springer Verlag

Early detection of bacterial transmission and outbreaks in hospitals is important because nosocomial infections can result in health complications and longer hospitalization. Current practice to detect outbreaks uses genotyping methods amplified frag

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a22ab4988455df36ce3358b02d45eeb1
https://research.vumc.nl/en/publications/efe74728-62b1-4143-9695-eb645d222287

Recommendations for the introduction of metagenomic next-generation sequencing in clinical virology, part II

Autor: Vries, J.J.C. de, Brown, J.R., Couto, N., Beer, M., Mercier, P. le, Sidorov, I., Papa, A., Fischer, N., Munnink, B.B.O., Rodriquez, C., Zaheri, M., Sayiner, A., Honemann, M., Cataluna, A.P., Carbo, E.C., Bachofen, C., Kubacki, J., Schmitz, D., Tsioka, K., Matamoros, S., Hoper, D., Hernandez, M., Puchhammer-Stockl, E., Lebrand, A., Huber, M., Simmonds, P., Claas, E.C.J., Lopez-Labrador, F.X., ESCV Network Next-Generation Seque

Publikováno v: Journal of Clinical Virology, 138:104812. Elsevier
JOURNAL OF CLINICAL VIROLOGY
r-FISABIO. Repositorio Institucional de Producción Científica
instname
r-FISABIO: Repositorio Institucional de Producción Científica
Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunitat Valenciana (FISABIO)
Journal of Clinical Virology, 138. ELSEVIER

Metagenomic next-generation sequencing (mNGS) is an untargeted technique for determination of microbial DNA/RNA sequences in a variety of sample types from patients with infectious syndromes. mNGS is still in its early stages of broader translation i

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bb09025e0b114951230c62c4edd7883e
https://hdl.handle.net/1887/3249096

Understanding and predicting ciprofloxacin minimum inhibitory concentration in Escherichia coli with machine learning

Autor: Pataki B. A., Matamoros S., van der Putten B. C. L., Remondini D., Giampieri E., Aytan-Aktug D., Hendriksen R. S., Lund O., Csabai I., Schultsz C., Janes V., Clausen P., Aarestrup F. M., Koopmans M., Pataki B., Visontai D., Steger J., Szalai-Gindl J. M., Pakseresht N., Rossello M., Silvester N., Amid C., Cochrane G., Pradel F., Westeel E., Fuchs S., Kumar S. M., Xavier B. B., Ngoc M. N., Pasquali F., Petrovska L., Ajayi D., Nielsen E. M., Trung N. V., Hoa N. T., Ishii Y., Aoki K., McDermott P.

Publikováno v: Scientific Reports
Scientific Reports, Vol 10, Iss 1, Pp 1-9 (2020)
Scientific Reports, 10(1):15026. Nature Publishing Group
Pataki, B Á, Matamoros, S, van der Putten, B C L, Remondini, D, Giampieri, E, Aytan-Aktug, D, Hendriksen, R S, Lund, O, Csabai, I, Schultsz, C & COMPARE ML-AMR group, SPS 2020, ' Understanding and predicting ciprofloxacin minimum inhibitory concentration in Escherichia coli with machine learning ', Scientific Reports, vol. 10, no. 1, 15026 . https://doi.org/10.1038/s41598-020-71693-5
Scientific reports, 10(1):15026. Nature Publishing Group

2.AbstractA possible way to tackle the crisis of antimicrobial resistance development is a strict policy when prescribing antibiotics. Thus, it is important that prescriptions are based on antimicrobial susceptibility data to ensure effective treatme

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Limited contribution of non-intensive chicken farming to ESBL-producing Escherichia coli colonization in humans in Vietnam: An epidemiological and genomic analysis

Autor: Trung, Nguyen Vinh, Jamrozy, Dorota, Matamoros, S. bastien, Carrique-Mas, Juan J., Mai, Ho Huynh, Hieu, Thai Quoc, Mai, Nguyen Thi Nhu, Wagenaar, Jaap A., Thwaites, Guy, Parkhill, Julian, Schultsz, Constance, Hoa, Ngo Thi

Publikováno v: Journal of antimicrobial chemotherapy, 74(3), 561-570. Oxford University Press

Objectives: To investigate the risk of colonization with ESBL-producing Escherichia coli (ESBL-Ec) in humans in Vietnam associated with non-intensive chicken farming. Methods: Faecal samples from 204 randomly selected farmers and their chickens, and

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=narcis______::8ac423b680cea262c3d97e0be956e560
https://pure.amc.nl/en/publications/limited-contribution-of-nonintensive-chicken-farming-to-esblproducing-escherichia-coli-colonization-in-humans-in-vietnam-an-epidemiological-and-genomic-analysis(387bff28-75c8-4835-9585-53fb649060c2).html