Zobrazeno 1 - 10
of 116
pro vyhledávání: '"Mass spectrometry data format"'
Publikováno v:
Bioinformatics. 37:3923-3925
Motivation Mass spectrometry (MS) data, used for proteomics and metabolomics analyses, have seen considerable growth in the last years. Aiming at reducing the associated storage costs, dedicated compression algorithms for MS data have been proposed,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d6c366ac8e64efa26453fb5e435f5a65
https://doi.org/10.1093/bioinformatics/btab636
https://doi.org/10.1093/bioinformatics/btab636
Publikováno v:
J Proteome Res
Glycans are responsible for many biological activities; however, their structures are incredibly diverse and complex often rendering the field of glycomics unsolvable by a single analytical technique. The development of multiple chemical derivatizati
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0d96b896576b057e3c63a44d7e49d939
https://pubmed.ncbi.nlm.nih.gov/33417767
https://pubmed.ncbi.nlm.nih.gov/33417767
Autor:
Filippo Rusconi, Olivier Langella
Publikováno v:
Journal of The American Society for Mass Spectrometry
Journal of The American Society for Mass Spectrometry, Springer Verlag (Germany), In press, ⟨10.1021/jasms.0c00402⟩
Journal of The American Society for Mass Spectrometry, Springer Verlag (Germany), In press, ⟨10.1021/jasms.0c00402⟩
International audience; mineXpert is a mass spectrometric data visualization and exploration software supporting only MS1 data that is aimed at proteomics scientists who do rarely require manual MS/MS data visualization and exploration (Rusconi, F. J
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6eac45617ec2b90467dde5af958b81e3
https://hal.archives-ouvertes.fr/hal-03166825
https://hal.archives-ouvertes.fr/hal-03166825
Autor:
Oliver Kohlbacher, Oliver Alka, Samuel Wein, Timo Sachsenberg, Eugen Netz, Julianus Pfeuffer, Hendrik Weisser, Leon Bichmann, Hannes L. Röst, Marc Rurik
Computational mass spectrometry is plagued by a multitude of issues, including a heterogeneous software environment, complex workflows and proprietary tools. OpenMS addresses these challenges by providing robust open-source software for users and an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::944eee0a38afa1a4046ef8434972b51b
https://doi.org/10.1039/9781788019880-00201
https://doi.org/10.1039/9781788019880-00201
Autor:
Xiaojing Wang, Eric W. Deutsch, Tobias Ternent, David Fenyö, Andrew R. Jones, Fawaz Ghali, Volodimir Olexiouk, Juan Antonio Vizcaíno, Gerben Menschaert, Bing Zhang
Publikováno v:
Genome Biology, Vol 19, Iss 1, Pp 1-8 (2018)
Genome Biology
GENOME BIOLOGY
Genome Biology
GENOME BIOLOGY
SummaryOn behalf of The Human Proteome Organization (HUPO) Proteomics Standards Initiative (PSI), we are here introducing two novel standard data formats, proBAM and proBed, that have been developed to address the current challenges of integrating ma
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bf79c899b9831e70e888587aab046d2a
http://link.springer.com/article/10.1186/s13059-017-1377-x
http://link.springer.com/article/10.1186/s13059-017-1377-x
Autor:
Raeuf Roushangar, George I. Mias
Publikováno v:
Journal of Mass Spectrometry. 52:315-318
MathIOmica-MSViewer is an add-on graphical user interface utility for the Mathematica software system which facilitates the visualization and exploration of spectra from open format mass spectrometry files (mzXML and mzML standard community formats).
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::349d555e0d3865e42e44316936e95dca
https://doi.org/10.1002/jms.3928
https://doi.org/10.1002/jms.3928
Autor:
Josie Hayes, Sandrine Dudoit, Courtney Schiffman, Stephen M. Rappaport, William M. B. Edmands, Hasmik Grigoryan, Yukiko Yano
SummaryLiquid chromatography-high resolution mass spectrometry (LC-HRMS) has been used to establish a method, referred to as ‘adductomics’, for characterisation of putative protein adducts at selected loci in human serum albumin (HSA). Applicatio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a4ce08468a2c096e20b094aaa6d04d8d
Autor:
Helmut E. Meyer, Christian Stephan, Martin Eisenacher, Gerhard Mayer, Katrin Marcus, Michael Kohl
Publikováno v:
Journal of Proteomics. 129:56-62
With the growing amount of experimental data produced in proteomics experiments and the requirements/recommendations of journals in the proteomics field to publicly make available data described in papers, a need for long-term storage of proteomics d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::782b86c7713de95db16bd84a8c2adac1
https://doi.org/10.1016/j.jprot.2015.06.015
https://doi.org/10.1016/j.jprot.2015.06.015
Autor:
John R. Yates
Publikováno v:
Journal of the American Society for Mass Spectrometry. 26:1804-1813
Advances in computer technology and software have driven developments in mass spectrometry over the last 50 years. Computers and software have been impactful in three areas: the automation of difficult calculations to aid interpretation, the collecti
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cdb11632bace2c9f8e7c9de0d6aefe70
https://doi.org/10.1007/s13361-015-1220-0
https://doi.org/10.1007/s13361-015-1220-0
Publikováno v:
Genomics, Proteomics & Bioinformatics, Vol 13, Iss 1, Pp 36-39 (2015)
Genomics, Proteomics & Bioinformatics
Genomics, Proteomics & Bioinformatics
With the development of high-resolution and high-throughput mass spectrometry (MS) technology, a large quantum of proteomic data is continually being generated. Collecting and sharing these data are a challenge that requires immense and sustained hum
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a69a250145a3257b4710a12dac95fab3
http://www.sciencedirect.com/science/article/pii/S1672022915000054
http://www.sciencedirect.com/science/article/pii/S1672022915000054