Zobrazeno 1 - 10 of 339 pro vyhledávání: '"Maspero D."'
1
Variant calling from scRNA-seq data allows the assessment of cellular identity in patient-derived cell lines
Autor: Ramazzotti D., Angaroni F., Maspero D., Ascolani G., Castiglioni I., Piazza R., Antoniotti M., Graudenzi A.
Publikováno v: Nature communications 13 (2022): 2718.
info:cnr-pdr/source/autori:Ramazzotti D.; Angaroni F.; Maspero D.; Ascolani G.; Castiglioni I.; Piazza R.; Antoniotti M.; Graudenzi A./titolo:Variant calling from scRNA-seq data allows the assessment of cellular identity in patient-derived cell lines/doi:/rivista:Nature communications/anno:2022/pagina_da:2718/pagina_a:/intervallo_pagine:2718/volume:13
MATTERS ARISING
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=cnr_________::109795dff1c1f86e143aef43737fdd28
http://www.cnr.it/prodotto/i/467459
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2
Akademický článek
LACE 2.0: an interactive R tool for the inference and visualization of longitudinal cancer evolution.
Autor: Ascolani G; Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy. gianluca.ascolani@unimib.it., Angaroni F; Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy., Maspero D; Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy., Craighero F; Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy., Bhavesh NLS; Department of Biological Sciences, Birla Institute of Technology and Science (BITS), Pilani, Rajasthan, India., Piazza R; Department of Medicine and Surgery, University of Milan-Bicocca, University of Milan-Bicocca, Milan, Italy.; Bicocca Bioinformatics Biostatistics and Bioimaging Centre - B4, University of Milan-Bicocca, Vedano al Lambro, Monza, Italy., Damiani C; Department of Biotechnology and Biosciences, University of Milan-Bicocca, Milan, Italy., Ramazzotti D; Department of Medicine and Surgery, University of Milan-Bicocca, University of Milan-Bicocca, Milan, Italy., Antoniotti M; Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy.; Bicocca Bioinformatics Biostatistics and Bioimaging Centre - B4, University of Milan-Bicocca, Vedano al Lambro, Monza, Italy., Graudenzi A; Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy.; Bicocca Bioinformatics Biostatistics and Bioimaging Centre - B4, University of Milan-Bicocca, Vedano al Lambro, Monza, Italy.
Publikováno v: BMC bioinformatics [BMC Bioinformatics] 2023 Mar 17; Vol. 24 (1), pp. 99. Date of Electronic Publication: 2023 Mar 17.
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3
Akademický článek
SparseSignatures: An R package using LASSO-regularized non-negative matrix factorization to identify mutational signatures from human tumor samples.
Autor: Mella L; Department of Biomedical Sciences, Humanitas University, Rozzano, Italy., Lal A; Insitro, 279 E Grand Avenue, South San Francisco, CA, USA., Angaroni F; Department of Informatics, Systems and Communication, Università degli Studi di Milano-Bicocca, Milan, Italy., Maspero D; Department of Informatics, Systems and Communication, Università degli Studi di Milano-Bicocca, Milan, Italy., Piazza R; Department of Medicine and Surgery, Università degli Studi di Milano-Bicocca, Milan, Italy; Bicocca Bioinformatics Biostatistics and Bioimaging Centre - B4, Milan, Italy., Sidow A; Department of Pathology, Stanford University, Stanford, CA, USA., Antoniotti M; Department of Informatics, Systems and Communication, Università degli Studi di Milano-Bicocca, Milan, Italy; Bicocca Bioinformatics Biostatistics and Bioimaging Centre - B4, Milan, Italy. Electronic address: marco.antoniotti@unimib.it., Graudenzi A; Department of Informatics, Systems and Communication, Università degli Studi di Milano-Bicocca, Milan, Italy; Bicocca Bioinformatics Biostatistics and Bioimaging Centre - B4, Milan, Italy; Institute of Molecular Bioimaging and Physiology, National Research Council (IBFM-CNR), Segrate, Italy. Electronic address: alex.graudenzi@unimib.it., Ramazzotti D; Department of Medicine and Surgery, Università degli Studi di Milano-Bicocca, Milan, Italy. Electronic address: daniele.ramazzotti@unimib.it.
Publikováno v: STAR protocols [STAR Protoc] 2022 Sep 16; Vol. 3 (3), pp. 101513. Date of Electronic Publication: 2022 Jul 01.
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4
Akademický článek
Chemotherapy after PD-1 inhibitors in relapsed/refractory Hodgkin lymphoma: Outcomes and clonal evolution dynamics.
Autor: Calabretta E; Department of Biomedical Sciences, Humanitas University, Milan, Italy.; Department of Oncology and Hematology, Humanitas Cancer Center, IRCCS Humanitas Research Hospital, Milan, Italy., Guidetti A; Division of Hematology and Bone Marrow Transplantation, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy.; University of Milano, Milan, Italy., Ricci F; Department of Oncology and Hematology, Humanitas Cancer Center, IRCCS Humanitas Research Hospital, Milan, Italy., Di Trani M; Department of Biomedical Sciences, Humanitas University, Milan, Italy., Monfrini C; Division of Hematology and Bone Marrow Transplantation, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy., Magagnoli M; Department of Oncology and Hematology, Humanitas Cancer Center, IRCCS Humanitas Research Hospital, Milan, Italy., Bramanti S; Department of Oncology and Hematology, Humanitas Cancer Center, IRCCS Humanitas Research Hospital, Milan, Italy., Maspero D; Dipartimento di Informatica, Sistemistica e Comunicazione, Università degli Studi di Milano-Bicocca, Milan, Italy.; Institute of Molecular Bioimaging and Physiology, Consiglio Nazionale delle Ricerche (IBFM-CNR), Segrate, Milan, Italy., Morello L; Department of Oncology and Hematology, Humanitas Cancer Center, IRCCS Humanitas Research Hospital, Milan, Italy., Merli M; Department of Hematology, University Hospital 'Ospedale di Circolo e Fondazione Macchi - ASST Sette Laghi', University of Insubria, Varese, Italy., Di Rocco A; Department of Translational and Precision Medicine, La Sapienza University, Rome, Italy., Graudenzi A; Institute of Molecular Bioimaging and Physiology, Consiglio Nazionale delle Ricerche (IBFM-CNR), Segrate, Milan, Italy.; Bicocca Bioinformatics, Biostatistics and Bioimaging Centre (B4), Università degli Studi di Milano-Bicocca, Milan, Italy., Derenzini E; IEO European Institute of Oncology IRCCS, Milan, Italy.; Department of Health Sciences, University of Milan, Italy., Antoniotti M; Dipartimento di Informatica, Sistemistica e Comunicazione, Università degli Studi di Milano-Bicocca, Milan, Italy.; Bicocca Bioinformatics, Biostatistics and Bioimaging Centre (B4), Università degli Studi di Milano-Bicocca, Milan, Italy., Rossi D; Clinic of Hematology, Oncology Institute of Southern Switzerland, Bellinzona, Switzerland.; Institute of Oncology Research, Bellinzona, Switzerland.; Faculty of Biomedical Sciences, USI, Lugano, Switzerland., Corradini P; Division of Hematology and Bone Marrow Transplantation, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy.; University of Milano, Milan, Italy., Santoro A; Department of Biomedical Sciences, Humanitas University, Milan, Italy.; Department of Oncology and Hematology, Humanitas Cancer Center, IRCCS Humanitas Research Hospital, Milan, Italy., Carlo-Stella C; Department of Biomedical Sciences, Humanitas University, Milan, Italy.; Department of Oncology and Hematology, Humanitas Cancer Center, IRCCS Humanitas Research Hospital, Milan, Italy.
Publikováno v: British journal of haematology [Br J Haematol] 2022 Jul; Vol. 198 (1), pp. 82-92. Date of Electronic Publication: 2022 Apr 25.
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5
Akademický článek
Early detection and improved genomic surveillance of SARS-CoV-2 variants from deep sequencing data.
Autor: Ramazzotti D; Department of Medicine and Surgery, University of Milan-Bicocca, Monza, Italy., Maspero D; Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy.; Institute of Molecular Bioimaging and Physiology, National Research Council (IBFM-CNR), Segrate, Milan, Italy.; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain., Angaroni F; Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy., Spinelli S; Department of Medicine and Surgery, University of Milan-Bicocca, Monza, Italy., Antoniotti M; Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy.; Bicocca Bioinformatics, Biostatistics and Bioimaging Centre - B4, Milan, Italy., Piazza R; Department of Medicine and Surgery, University of Milan-Bicocca, Monza, Italy.; Bicocca Bioinformatics, Biostatistics and Bioimaging Centre - B4, Milan, Italy., Graudenzi A; Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy.; Institute of Molecular Bioimaging and Physiology, National Research Council (IBFM-CNR), Segrate, Milan, Italy.; Bicocca Bioinformatics, Biostatistics and Bioimaging Centre - B4, Milan, Italy.
Publikováno v: IScience [iScience] 2022 Jun 17; Vol. 25 (6), pp. 104487. Date of Electronic Publication: 2022 May 30.
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6
Report
Variant calling from scRNA-seq data allows the assessment of cellular identity in patient-derived cell lines.
Autor: Ramazzotti D; Dept. of Medicine and Surgery, Univ. of Milan-Bicocca, Monza, Italy., Angaroni F; Dept. of Informatics, Systems and Communication, Univ. of Milan-Bicocca, Milan, Italy., Maspero D; Dept. of Informatics, Systems and Communication, Univ. of Milan-Bicocca, Milan, Italy.; Inst. of Molecular Bioimaging and Physiology, National Research Council (IBFM-CNR), Segrate, Milan, Italy., Ascolani G; Dept. of Informatics, Systems and Communication, Univ. of Milan-Bicocca, Milan, Italy., Castiglioni I; Dept. of Physics 'Giuseppe Occhialini', Univ. of Milan-Bicocca, Milan, Italy., Piazza R; Dept. of Medicine and Surgery, Univ. of Milan-Bicocca, Monza, Italy.; Bicocca Bioinformatics, Biostatistics and Bioimaging Centre - B4, Milan, Italy., Antoniotti M; Dept. of Informatics, Systems and Communication, Univ. of Milan-Bicocca, Milan, Italy.; Bicocca Bioinformatics, Biostatistics and Bioimaging Centre - B4, Milan, Italy., Graudenzi A; Dept. of Informatics, Systems and Communication, Univ. of Milan-Bicocca, Milan, Italy. alex.graudenzi@unimib.it.; Inst. of Molecular Bioimaging and Physiology, National Research Council (IBFM-CNR), Segrate, Milan, Italy. alex.graudenzi@unimib.it.; Bicocca Bioinformatics, Biostatistics and Bioimaging Centre - B4, Milan, Italy. alex.graudenzi@unimib.it.
Publikováno v: Nature communications [Nat Commun] 2022 May 12; Vol. 13 (1), pp. 2718. Date of Electronic Publication: 2022 May 12.
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7
Akademický článek
Large-scale analysis of SARS-CoV-2 synonymous mutations reveals the adaptation to the human codon usage during the virus evolution.
Autor: Ramazzotti D, Angaroni F; Department of Informatics, Systems and Communication, Università degli Studi di Milano-Bicocca, Viale Sarca 336, Milano 20100, Italy., Maspero D; Department of Informatics, Systems and Communication, Università degli Studi di Milano-Bicocca, Viale Sarca 336, Milano 20100, Italy., Mauri M; Department of Medicine and Surgery, Università degli Studi di Milano-Bicocca, Via Cadore 48, Monza 20900, Italy., D'Aliberti D; Department of Medicine and Surgery, Università degli Studi di Milano-Bicocca, Via Cadore 48, Monza 20900, Italy., Fontana D; Department of Medicine and Surgery, Università degli Studi di Milano-Bicocca, Via Cadore 48, Monza 20900, Italy., Antoniotti M; Department of Informatics, Systems and Communication, Università degli Studi di Milano-Bicocca, Viale Sarca 336, Milano 20100, Italy., Elli EM; Department of Medicine and Surgery, Università degli Studi di Milano-Bicocca, Via Cadore 48, Monza 20900, Italy., Graudenzi A; Institution of Molecular Bioimaging and Physiology, Consiglio Nazionale delle Ricerche (IBFM-CNR), Via fratelli Cervi 93, Segrate 20054, Italy., Piazza R; Department of Medicine and Surgery, Università degli Studi di Milano-Bicocca, Via Cadore 48, Monza 20900, Italy.
Publikováno v: Virus evolution [Virus Evol] 2022 Mar 24; Vol. 8 (1), pp. veac026. Date of Electronic Publication: 2022 Mar 24 (Print Publication: 2022).
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8
Akademický článek
The Influence of Nutrients Diffusion on a Metabolism-driven Model of a Multi-cellular System.
Autor: Maspero, Davide1 (AUTHOR), Damiani, Chiara1 (AUTHOR), Antoniotti, Marco1 (AUTHOR), Graudenzi, Alex1 (AUTHOR), Di Filippo, Marzia2 (AUTHOR), Vanoni, Marco2 (AUTHOR), Caravagna, Giulio3 (AUTHOR), Colombo, Riccardo4 (AUTHOR), Ramazzotti, Daniele5 (AUTHOR), Pescini, Dario6 (AUTHOR) dario.pescini@unimib.it, Dennunzio, Alberto (AUTHOR), Păun, Gheorghe (AUTHOR), Rozenberg, Grzegorz (AUTHOR), Zandron, Claudio (AUTHOR)
Publikováno v: Fundamenta Informaticae. 2020, Vol. 171 Issue 1-4, p279-295. 17p.
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9
Akademický článek
A review of computational strategies for denoising and imputation of single-cell transcriptomic data.
Autor: Patruno L; Department of Informatics, Systems and Communication of the University of Milan-Bicocca., Maspero D; Department of Informatics, Systems and Communication of the University of Milan-Bicocca., Craighero F; Department of Informatics, Systems and Communication of the University of Milan-Bicocca., Angaroni F; Department of Informatics, Systems and Communication of the University of Milan-Bicocca., Antoniotti M; Department of Informatics, Systems and Communication of the University of Milan-Bicocca., Graudenzi A; Department of Informatics, Systems and Communication of the University of Milan-Bicocca.
Publikováno v: Briefings in bioinformatics [Brief Bioinform] 2021 Jul 20; Vol. 22 (4).
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10
Akademický článek
Characterization of SARS-CoV-2 Mutational Signatures from 1.5+ Million Raw Sequencing Samples.
Autor: Aroldi, Andrea1,2 (AUTHOR), Angaroni, Fabrizio3,4 (AUTHOR), D'Aliberti, Deborah2 (AUTHOR), Spinelli, Silvia2 (AUTHOR), Crespiatico, Ilaria2 (AUTHOR), Crippa, Valentina2 (AUTHOR), Piazza, Rocco2,5 (AUTHOR), Graudenzi, Alex3,5 (AUTHOR) alex.graudenzi@unimib.it, Ramazzotti, Daniele2 (AUTHOR) alex.graudenzi@unimib.it
Publikováno v: Viruses (1999-4915). Jan2023, Vol. 15 Issue 1, p7. 8p.
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