Zobrazeno 1 - 10 of 32 pro vyhledávání: '"Masaomi Kato"'
1
Akademický článek
Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data.
Autor: Chao Cheng, Koon-Kiu Yan, Woochang Hwang, Jiang Qian, Nitin Bhardwaj, Joel Rozowsky, Zhi John Lu, Wei Niu, Pedro Alves, Masaomi Kato, Michael Snyder, Mark Gerstein
Publikováno v: PLoS Computational Biology, Vol 7, Iss 11, p e1002190 (2011)
We present a network framework for analyzing multi-level regulation in higher eukaryotes based on systematic integration of various high-throughput datasets. The network, namely the integrated regulatory network, consists of three major types of regu
Externí odkaz: https://doaj.org/article/29e6a05148ab40a48f768494a68c053c
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2
Comparative Analysis of the Transcriptome across Distant Species
Autor: Gang Fang, LaDeana W. Hillier, Brenton R. Graveley, Ali Mortazavi, Norbert Perrimon, Nathan Boley, Jingyi Jessica Li, William C. Spencer, James B. Brown, Chau Huynh, Roger A. Hoskins, Mark Gerstein, Ann S. Hammonds, Sarah Djebali, Sonali Jha, Kenneth H. Wan, Cédric Howald, Raymond K. Auerbach, Chenghai Xue, Haiyan Huang, Jorg Drenkow, Elise A. Feingold, Julien Lagarde, Daifeng Wang, Dmitri D. Pervouchine, Thomas R. Gingeras, Guilin Wang, Peter Cherbas, Brent Ewing, Chao Di, Gary Saunders, Benjamin W. Booth, Joel Rozowsky, Yan Zhang, Anastasia Samsonova, Dionna M. Kasper, Cristina Sisu, Marcus H. Stoiber, Jiayu Wen, Michael O. Duff, Felix Schlesinger, Gennifer E. Merrihew, Sara Olson, Susan E. Celniker, Burak H. Alver, Chao Cheng, Gemma E. May, Alexandre Reymond, Carrie A. Davis, Alexander Dobin, Max E. Boeck, Roger P. Alexander, Michael J. Pazin, Peter J. Park, Adam Frankish, Lucy Cherbas, Zhi Lu, Kevin Y. Yip, Henry Zheng, Owen Thompson, Jing Leng, Kathie L. Watkins, Andrea Tanzer, Valerie Reinke, Rebecca McWhirter, Eric C. Lai, Steven E. Brenner, Robert H. Waterston, Koon-Kiu Yan, Masaomi Kato, Roderic Guigó, Huaien Wang, Kimberly Bell, Pnina Strasbourger, Baikang Pei, Jen Harrow, Long Hu, Chris Zaleski, Rabi Murad, Thomas C. Kaufman, Erik Ladewig, Robert R. Kitchen, Anurag Sethi, Kejia Wen, Guanjun Gao, Arif Harmanci, Megan Fastuca, Brian Oliver, Frank J. Slack, David M. Miller, Tim Hubbard, Garrett Robinson, Peter J. Good, Peter J. Bickel, Michael J. MacCoss, Li Yang
Publikováno v: Nature
Recercat. Dipósit de la Recerca de Catalunya
instname
NATURE
Nature, vol 512, iss 7515
Nature, vol. 512, no. 7515, pp. 445-448
The transcriptome is the readout of the genome. Identifying common features in it across distant species can reveal fundamental principles. To this end, the ENCODE and modENCODE consortia have generated large amounts of matched RNA-sequencing data fo
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6ff4743e37adbb649e1f3de16b418d13
http://europepmc.org/articles/PMC4155737
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3
An intestinal microRNA modulates the homeostatic adaptation to chronic oxidative stress in
Autor: Mohammed Abul Kashem, Chao Cheng, Masaomi Kato
Publikováno v: Aging (Albany NY)
Adaptation to an environmental or metabolic perturbation is a feature of the evolutionary process. Recent insights into microRNA function suggest that microRNAs serve as key players in a robust adaptive response against stress in animals through thei
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c7c35cb63836d1d1b697eed46a93a99b
https://pubmed.ncbi.nlm.nih.gov/27623524
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4
Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project
Autor: L. Dick, Mark S. Guyer, D. Mecenas, William C. Spencer, Ming Sin Cheung, Sebastian D. Mackowiak, Tao Liu, A. Vielle, Abby F. Dernburg, Mitzi Morris, Bradley I. Arshinoff, Sheldon J. McKay, Amber Leahey, Thea A. Egelhofer, Lukas Habegger, Michael Snyder, Teruaki Takasaki, Roger P. Alexander, Stuart K. Kim, Ashish Agarwal, Ting Han, A. Leo Iniguez, Eric L. Van Nostrand, Gos Micklem, S. Taing, Ekta Khurana, Joel Rozowsky, Beijing Wu, Steven Henikoff, Adrian Carr, Philip Green, Angie S. Hinrichs, A. Muroyama, Jason D. Lieb, Paul Lloyd, Yaniv Lubling, P. Scheid, Kevin Y. Yip, Stefan R. Henz, Chao Cheng, Jiang Du, Mei Zhong, P. Alves, Elicia Preston, Zhi John Lu, Vishal Khivansara, Robert H. Waterston, J. Janette, C. Slightam, Frank J. Slack, David M. Miller, Eo Stinson, Nikolaus Rajewsky, Eran Segal, Jing Leng, Tony Hyman, R. Robilotto, C. Shou, Gunnar Rätsch, Eric C. Lai, Mihail Sarov, X. Shirley Liu, Isabel J. Latorre, A. Chateigner, Francois Gullier, Raymond K. Auerbach, W. James Kent, Sergio Contrino, Jeremy Brouillet, Lincoln Stein, T. Phippen, Andrea Sboner, Marco Mangone, Georg Zeller, Hoang Pham, Mark Gerstein, Michael J. MacCoss, Siew Loon Ooi, Cathleen M. Brdlik, D. Vafeados, Nicole L. Washington, Andreas Rechtsteiner, Peter J. Good, Susan Strome, Galt P. Barber, Kristin C. Gunsalus, John I. Murray, Valerie Reinke, Luke Dannenberg, Masaomi Kato, M. Jensen, X. Feng, John Kim, Kahn Rhrissorrakrai, H. Holster, Kohta Ikegami, Christina M. Whittle, M. Gutwein, Rachel Lyne, Wei Niu, Richard J.H. Smith, LaDeana W. Hillier, P. Kolasinska-Zwierz, Heidi Rosenbaum, Andréa C. Dosé, Xingliang Zhou, Marc D. Perry, Rajkumar Sasidharan, Rebecca F. Lowdon, Arshad Desai, Z. Zha, J. Brennan, Guilin Wang, P. Ruzanov, Brent Ewing, Gennifer E. Merrihew, Kim Rutherford, Reto Gassmann, Elise A. Feingold, Fabio Piano, Julie Ahringer, E. Kephart, Lucas Lochovsky, Sevinc Ercan, Suzanna E. Lewis, Ksenia Voronina, Koon-Kiu Yan, Jorja G. Henikoff, Hyunjin Shin, Hiram Clawson, Ghia Euskirchen
Publikováno v: Science. 330:1775-1787
From Genome to Regulatory Networks For biologists, having a genome in hand is only the beginning—much more investigation is still needed to characterize how the genome is used to help to produce a functional organism (see the Perspective by Blaxter
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::af1c9379c54f3982c93a77444265918c
https://doi.org/10.1126/science.1196914
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5
MicroRNAs Both Promote and Antagonize Longevity in C. elegans
Autor: Katherine Zhou, Zachary Pincus, Alexandre de Lencastre, Siu Sylvia Lee, Frank J. Slack, Masaomi Kato
Publikováno v: Current Biology. 20:2159-2168
Summary Background Aging is under genetic control in C. elegans , but the mechanisms of life-span regulation are not completely known. MicroRNAs (miRNAs) regulate various aspects of development and metabolism, and one miRNA has been previously implic
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ba9ca742fb1665ba260799001af9db0a
https://doi.org/10.1016/j.cub.2010.11.015
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6
The mir-34 microRNA is required for the DNA damage response in vivo in C. elegans and in vitro in human breast cancer cells
Autor: Frank J. Slack, Roman-Ulrich Müller, Aurora Esquela-Kerscher, Trupti Paranjape, Joanne B. Weidhaas, Erin F. Gillespie, Masaomi Kato, K Keane, Sunitha Nallur
Publikováno v: Oncogene. 28:2419-2424
MicroRNAs (miRNAs) are important regulators of cell fate determination and homeostasis. Expression of these small RNA genes is tightly regulated during development and in normal tissues, but they are often misregulated in cancer. MiRNA expression is
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::29e7a8b6818e5a2481a254d709488a43
https://doi.org/10.1038/onc.2009.106
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7
microRNAs: small molecules with big roles -C. elegans to human cancer
Autor: Frank J. Slack, Masaomi Kato
Publikováno v: Biology of the Cell. 100:71-81
miRNAs (microRNAs) were first discovered as critical regulators of developmental timing events in Caenorhabditis elegans. Subsequent studies have shown that miRNAs and cellular factors necessary for miRNA biogenesis are conserved in many organisms, s
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::436c62066570bd41cd5818fd864efd65
https://doi.org/10.1042/bc20070078
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8
Chromatin assembly factor 1 ensures the stable maintenance of silent chromatin states in Arabidopsis
Autor: Yuya Ogawa, Hidetaka Kaya, Mitsutomo Abe, Ortrun Mittelsten Scheid, Tetsuji Kakutani, Masaomi Kato, Kei-ichi Shibahara, Shin Takeda, Tatsuya Ono, Takashi Araki
Publikováno v: Genes to Cells. 11:153-162
Newly synthesized DNA is rapidly assembled into mature nucleosomes by the deposition of pre-existing and nascent histones, and some parts of this process are facilitated by chromatin assembly factor 1 (CAF-1). Loss-of-function mutants of CAF-1 in Ara
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::f4dd600a6bb8cf44733a87a2dc3c1580
https://doi.org/10.1111/j.1365-2443.2006.00928.x
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10
Epigenetic Control of CACTA Transposon Mobility in Arabidopsis thaliana
Autor: Tetsuji Kakutani, Kazuya Takashima, Masaomi Kato
Publikováno v: Genetics. 168:961-969
Epigenetic mutation, heritable developmental variation not based on a change in nucleotide sequence, is widely reported in plants. However, the developmental and evolutionary significance of such mutations remains enigmatic. On the basis of our studi
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::37b65f1c22c8eda46fb57c56e5aba429
https://doi.org/10.1534/genetics.104.029637
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