Catabolism of Branched Chain Amino Acids Contributes Significantly to Synthesis of Odd-Chain and Even-Chain Fatty Acids in 3T3-L1 Adipocytes.

Autor: Crown, Scott B.¹, Marze, Nicholas¹, Antoniewicz, Maciek R.¹ mranton@udel.edu

Publikováno v: PLoS ONE. 12/28/2015, Vol. 10 Issue 12, p1-22. 22p.

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

Autor: Lensink, Marc F., Velankar, Sameer, Kryshtafovych, Andriy, Huang, Shen You, Schneidman-Duhovny, Dina, Sali, Andrej, Segura, Joan, Fernandez-Fuentes, Narcis, Viswanath, Shruthi, Elber, Ron, Grudinin, Sergei, Popov, Petr, Neveu, Emilie, Lee, Hasup, Baek, Minkyung, Park, Sangwoo, Heo, Lim, Lee, Gyu Rie, Seok, Chaok, Qin, Sanbo, Zhou, Huan Xiang, Ritchie, David W., Maigret, Bernard, Devignes, Marie Dominique, Ghoorah, Anisah, Torchala, Mieczyslaw, Chaleil, Raphaël A.G., Bates, Paul A., Ben-Zeev, Efrat, Eisenstein, Miriam, Negi, Surendra S., Weng, Zhiping, Vreven, Thom, Pierce, Brian G., Borrman, Tyler M., Yu, Jinchao, Ochsenbein, Françoise, Guerois, Raphaël, Vangone, Anna, Rodrigues, João P.G.L.M., Van Zundert, Gydo, Nellen, Mehdi, Xue, Li, Karaca, Ezgi, Melquiond, Adrien S.J., Visscher, Koen, Kastritis, Panagiotis L., Bonvin, Alexandre M.J.J., Xu, Xianjin, Qiu, Liming, Yan, Chengfei, Li, Jilong, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Shen, Yang, Peterson, Lenna X., Kim, Hyung Rae, Roy, Amit, Han, Xusi, Esquivel-Rodriguez, Juan, Kihara, Daisuke, Yu, Xiaofeng, Bruce, Neil J., Fuller, Jonathan C., Wade, Rebecca C., Anishchenko, Ivan, Kundrotas, Petras J., Vakser, Ilya A., Imai, Kenichiro, Yamada, Kazunori, Oda, Toshiyuki, Nakamura, Tsukasa, Tomii, Kentaro, Pallara, Chiara, Romero-Durana, Miguel, Jiménez-García, Brian, Moal, Iain H., Férnandez-Recio, Juan, Joung, Jong Young, Kim, Jong Yun, Joo, Keehyoung, Lee, Jooyoung, Kozakov, Dima, Vajda, Sandor, Mottarella, Scott, Hall, David R., Beglov, Dmitri, Mamonov, Artem, Xia, Bing, Bohnuud, Tanggis, Del Carpio, Carlos A., Ichiishi, Eichiro, Marze, Nicholas, Kuroda, Daisuke, Roy Burman, Shourya S., Gray, Jeffrey J., Chermak, Edrisse, Cavallo, Luigi, Oliva, Romina, Tovchigrechko, Andrey, Wodak, Shoshana J.

Publikováno v: Proteins: Structure, Function and Bioinformatics, 84(S1), 323-348
Lensink, M F, Velankar, S, Kryshtafovych, A, Huang, S Y, Schneidman-Duhovny, D, Sali, A, Segura, J, Fernandez-Fuentes, N, Viswanath, S, Elber, R, Grudinin, S, Popov, P, Neveu, E, Lee, H, Baek, M, Park, S, Heo, L, Lee, G R, Seok, C, Qin, S, Zhou, H X, Ritchie, D W, Maigret, B, Devignes, M D, Ghoorah, A, Torchala, M, Chaleil, R A G, Bates, P A, Ben-Zeev, E, Eisenstein, M, Negi, S S, Weng, Z, Vreven, T, Pierce, B G, Borrman, T M, Yu, J, Ochsenbein, F, Guerois, R, Vangone, A, Rodrigues, J P G L M, Van Zundert, G, Nellen, M, Xue, L, Karaca, E, Melquiond, A S J, Visscher, K, Kastritis, P L, Bonvin, A M J J, Xu, X, Qiu, L, Yan, C, Li, J, Ma, Z, Cheng, J, Zou, X, Shen, Y, Peterson, L X, Kim, H R, Roy, A, Han, X, Esquivel-Rodriguez, J, Kihara, D, Yu, X, Bruce, N J, Fuller, J C, Wade, R C, Anishchenko, I, Kundrotas, P J, Vakser, I A, Imai, K, Yamada, K, Oda, T, Nakamura, T, Tomii, K, Pallara, C, Romero-Durana, M, Jiménez-García, B, Moal, I H, Férnandez-Recio, J, Joung, J Y, Kim, J Y, Joo, K, Lee, J, Kozakov, D, Vajda, S, Mottarella, S, Hall, D R, Beglov, D, Mamonov, A, Xia, B, Bohnuud, T, Del Carpio, C A, Ichiishi, E, Marze, N, Kuroda, D, Roy Burman, S S, Gray, J J, Chermak, E, Cavallo, L, Oliva, R, Tovchigrechko, A & Wodak, S J 2016, Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment . in Proteins: Structure, Function and Bioinformatics . S1 edn, vol. 84, Proteins: Structure, Function and Bioinformatics, vol. 84, John Wiley and Sons Inc., pp. 323-348 . https://doi.org/10.1002/prot.25007

We present the results for CAPRI Round 30, the first joint CASP-CAPRI experiment, which brought together experts from the protein structure prediction and protein-protein docking communities. The Round comprised 25 targets from amongst those submitte

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https://research.vu.nl/en/publications/5b907461-0e7d-4d24-8a89-213a59e921be

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