Zobrazeno 1 - 10 of 67 pro vyhledávání: '"Marvig RL"'
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A comparison of tools for copy-number variation detection in germline whole exome and whole genome sequencing data
Autor: Gabrielaite, M, Torp, MH, Rasmussen, MS, Andreu-Sánchez, S, Vieira, FG, Pedersen, CB, Kinalis, S, Madsen, MB, Yde, CW, Rønn, Olsen L, Marvig, RL, Østrup, O, Rossing, Caroline Maria, Nielsen, Finn Cilius, Winther, Ole, Bagger, Frederik Otzen
Publikováno v: Gabrielaite, M, Torp, MH, Rasmussen, MS, Andreu-Sánchez, S, Vieira, FG, Pedersen, CB, Kinalis, S, Madsen, MB, Yde, CW, Rønn, O L, Marvig, RL, Østrup, O, Rossing, C M, Nielsen, F C, Winther, O & Bagger, F O 2021 ' A comparison of tools for copy-number variation detection in germline whole exome and whole genome sequencing data ' bioRxiv . https://doi.org/10.1101/2021.04.30.442110
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______2751::100668e3049504d1528768166e544952
https://curis.ku.dk/portal/da/publications/a-comparison-of-tools-for-copynumber-variation-detection-in-germline-whole-exome-and-whole-genome-sequencing-data(d4c758f7-e025-4035-b64e-4b1fafc49453).html
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3
Akademický článek
Rate of response to initial antiretroviral therapy according to level of pre-existing HIV-1 drug resistance detected by next-generation sequencing in the strategic timing of antiretroviral treatment (START) study.
Autor: Cozzi-Lepri A; Institute for Global Health, UCL, London, UK., Dunn D; Institute for Global Health, UCL, London, UK., Tostevin A; Institute for Global Health, UCL, London, UK., Marvig RL; Center for Genomic Medicine, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Bennedbaek M; Virus Research and Development Laboratory, Virus and Microbiological Special Diagnostics, Statens Serum Institute, Copenhagen, Denmark., Sharma S; Division of Biostatistics, School of Public Health, University of Minnesota, Minneapolis, Minnesota, USA., Kozal MJ; Stanford University, Palo Alto, California, USA., Gompels M; North Bristol NHS Trust, Bristol, UK., Pinto AN; The Kirby Institute, University of New South Wales, Sydney, New South Wales, Australia., Lundgren J; Copenhagen HIV Programme, Rigs Hospitalet, University of Copenhagen, Copenhagen, Denmark., Baxter JD; Cooper Medical School of Rowan University and Cooper University Health Care, Camden, New Jersey, USA.
Publikováno v: HIV medicine [HIV Med] 2024 Feb; Vol. 25 (2), pp. 212-222. Date of Electronic Publication: 2023 Sep 29.
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4
Akademický článek
Long-term evolution of antibiotic tolerance in Pseudomonas aeruginosa lung infections.
Autor: Ghoul M; Department of Biology, University of Oxford, Oxford, United Kingdom., Andersen SB; Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark., Marvig RL; Center for Genomic Medicine, Rigshospitalet, Copenhagen, Denmark., Johansen HK; Department of Clinical Microbiology, Afsnit 9301, Rigshospitalet, Copenhagen Ø, Denmark.; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Jelsbak L; Department of Biotechnology and Biomedicine, Technical University of Denmark, Lyngby, Denmark., Molin S; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Perron G; Center for Environmental Sciences and the Humanities, Bard College, Annandale-On-Hudson, NY, United States.; Center for Genomics and Systems Biology, New York University, New York, NY, United States., Griffin AS; Department of Biology, University of Oxford, Oxford, United Kingdom.
Publikováno v: Evolution letters [Evol Lett] 2023 Sep 20; Vol. 7 (6), pp. 389-400. Date of Electronic Publication: 2023 Sep 20 (Print Publication: 2023).
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5
Akademický článek
SpikeSeq: A rapid, cost efficient and simple method to identify SARS-CoV-2 variants of concern by Sanger sequencing part of the spike protein gene.
Autor: Jørgensen TS; The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DTU, Kongens Lyngby 2800, Denmark. Electronic address: tuesparholt@gmail.com., Pedersen MS; Department of Clinical Microbiology, Copenhagen University Hospital, Rigshospitalet, Copenhagen 2100, Denmark., Blin K; The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DTU, Kongens Lyngby 2800, Denmark., Kuntke F; Centre for Diagnostics, Department of Health Technology, Technical University of Denmark, DTU, Kongens Lyngby 2800, Denmark., Salling HK; Novo Nordisk A/S, Dept. 609 Virology, Gentofte 2820, Denmark., Marvig RL; Center for Genomic Medicine, Copenhagen University Hospital, Rigshospitalet, Copenhagen 2100, Denmark., Michaelsen TY; Department of Chemistry and Bioscience, Aalborg University, Aalborg 9220, Denmark., Albertsen M; Department of Chemistry and Bioscience, Aalborg University, Aalborg 9220, Denmark., Larsen H; Centre for Diagnostics, Department of Health Technology, Technical University of Denmark, DTU, Kongens Lyngby 2800, Denmark.
Publikováno v: Journal of virological methods [J Virol Methods] 2023 Feb; Vol. 312, pp. 114648. Date of Electronic Publication: 2022 Nov 08.
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6
Akademický článek
Deep-sequencing of viral genomes from a large and diverse cohort of treatment-naive HIV-infected persons shows associations between intrahost genetic diversity and viral load.
Autor: Gabrielaite M; Center for Genomic Medicine, Rigshospitalet, Copenhagen, Denmark., Bennedbæk M; Centre of Excellence for Health, Immunity and Infections, Department of Infectious Diseases, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark., Rasmussen MS; Center for Genomic Medicine, Rigshospitalet, Copenhagen, Denmark.; Section of Computational and RNA Biology, Department of Biology, University of Copenhagen, Copenhagen, Denmark., Kan V; Veterans Affairs Medical Center and The George Washington University School of Medicine and Health Sciences, Washington, District of Columbia, United States of America., Furrer H; Department of Infectious Diseases, Bern University Hospital, University of Bern, Bern, Switzerland., Flisiak R; Department of Infectious Diseases and Hepatology, Medical University of Bialystok, Bialystok, Poland., Losso M; Hospital General De Agudos J M Ramos Mejía, Buenos Aires, Argentina., Lundgren JD; Centre of Excellence for Health, Immunity and Infections, Department of Infectious Diseases, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark., Marvig RL; Center for Genomic Medicine, Rigshospitalet, Copenhagen, Denmark.
Publikováno v: PLoS computational biology [PLoS Comput Biol] 2023 Jan 03; Vol. 19 (1), pp. e1010756. Date of Electronic Publication: 2023 Jan 03 (Print Publication: 2023).
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7
Akademický článek
The Incidence, Survival, and HPV Impact of Second Primary Cancer following Primary Oropharyngeal Squamous Cell Carcinoma: A 20-Year Retrospective and Population-Based Study.
Autor: Andersen L; Department of Otorhinolaryngology, Head and Neck Surgery and Audiology, Rigshospitalet, University of Copenhagen, DK-2100 Copenhagen, Denmark., Jakobsen KK; Department of Otorhinolaryngology, Head and Neck Surgery and Audiology, Rigshospitalet, University of Copenhagen, DK-2100 Copenhagen, Denmark., Carlander AF; Department of Otorhinolaryngology, Head and Neck Surgery and Audiology, Rigshospitalet, University of Copenhagen, DK-2100 Copenhagen, Denmark., Garset-Zamani M; Department of Otorhinolaryngology, Head and Neck Surgery and Audiology, Rigshospitalet, University of Copenhagen, DK-2100 Copenhagen, Denmark., Friborg J; Department of Oncology, Herlev Hospital, University of Copenhagen, DK-2730 Herlev, Denmark., Kiss K; Department of Pathology, Rigshospitalet, University of Copenhagen, DK-2100 Copenhagen, Denmark., Marvig RL; Center for Genomic Medicine, Rigshospitalet, University of Copenhagen, DK-2100 Copenhagen, Denmark., Olsen C; Department of Pathology, Rigshospitalet, University of Copenhagen, DK-2100 Copenhagen, Denmark., Nielsen FC; Center for Genomic Medicine, Rigshospitalet, University of Copenhagen, DK-2100 Copenhagen, Denmark., Andersen E; Department of Oncology, Herlev Hospital, University of Copenhagen, DK-2730 Herlev, Denmark., Grønhøj C; Department of Otorhinolaryngology, Head and Neck Surgery and Audiology, Rigshospitalet, University of Copenhagen, DK-2100 Copenhagen, Denmark., Buchwald CV; Department of Otorhinolaryngology, Head and Neck Surgery and Audiology, Rigshospitalet, University of Copenhagen, DK-2100 Copenhagen, Denmark.
Publikováno v: Viruses [Viruses] 2022 Dec 22; Vol. 15 (1). Date of Electronic Publication: 2022 Dec 22.
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8
Akademický článek
Persistence and genetic adaptation of Pseudomonas aeruginosa in patients with chronic obstructive pulmonary disease.
Autor: Eklöf J; Department of Internal Medicine, Respiratory Medicine Section, Copenhagen University Hospital-Herlev and Gentofte Hospital, Herlev and Gentofte, Denmark., Misiakou MA; Center for Genomic Medicine, Copenhagen University Hospital-Rigshospitalet, Copenhagen, Denmark., Sivapalan P; Department of Internal Medicine, Respiratory Medicine Section, Copenhagen University Hospital-Herlev and Gentofte Hospital, Herlev and Gentofte, Denmark., Armbruster K; Department of Internal Medicine, Respiratory Medicine Section, Copenhagen University Hospital-Herlev and Gentofte Hospital, Herlev and Gentofte, Denmark., Browatzki A; Department of Respiratory and Infectious Diseases, Copenhagen University Hospital-North Zealand Hospital, Frederikssund and Hilleroed, Denmark., Nielsen TL; Department of Respiratory and Infectious Diseases, Copenhagen University Hospital-North Zealand Hospital, Frederikssund and Hilleroed, Denmark., Lapperre TS; Department of Respiratory Medicine, Copenhagen University Hospital-Bispebjerg Hospital, Copenhagen, Denmark., Andreassen HF; Department of Respiratory Medicine, Copenhagen University Hospital-Bispebjerg Hospital, Copenhagen, Denmark., Janner J; Department of Respiratory Medicine, Copenhagen University Hospital-Amager and Hvidovre Hospital, Hvidovre, Denmark., Ulrik CS; Department of Respiratory Medicine, Copenhagen University Hospital-Amager and Hvidovre Hospital, Hvidovre, Denmark., Gabrielaite M; Center for Genomic Medicine, Copenhagen University Hospital-Rigshospitalet, Copenhagen, Denmark., Johansen HK; Department of Clinical Microbiology, Copenhagen University Hospital-Rigshospitalet, Copenhagen, Denmark; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Jensen A; Department of Clinical Microbiology, Copenhagen University Hospital-Herlev and Gentofte Hospital, Herlev and Gentofte, Denmark., Nielsen TV; Department of Clinical Microbiology, Copenhagen University Hospital-Herlev and Gentofte Hospital, Herlev and Gentofte, Denmark., Hertz FB; Department of Clinical Microbiology, Copenhagen University Hospital-Herlev and Gentofte Hospital, Herlev and Gentofte, Denmark., Ghathian K; Department of Clinical Microbiology, Copenhagen University Hospital-Amager and Hvidovre Hospital, Hvidovre, Denmark., Calum H; Department of Clinical Microbiology, Copenhagen University Hospital-Amager and Hvidovre Hospital, Hvidovre, Denmark., Wilcke T; Department of Internal Medicine, Respiratory Medicine Section, Copenhagen University Hospital-Herlev and Gentofte Hospital, Herlev and Gentofte, Denmark., Seersholm N; Department of Internal Medicine, Respiratory Medicine Section, Copenhagen University Hospital-Herlev and Gentofte Hospital, Herlev and Gentofte, Denmark., Jensen JS; Department of Internal Medicine, Respiratory Medicine Section, Copenhagen University Hospital-Herlev and Gentofte Hospital, Herlev and Gentofte, Denmark; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Marvig RL; Center for Genomic Medicine, Copenhagen University Hospital-Rigshospitalet, Copenhagen, Denmark. Electronic address: rasmus.lykke.marvig@regionh.dk.
Publikováno v: Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases [Clin Microbiol Infect] 2022 Jul; Vol. 28 (7), pp. 990-995. Date of Electronic Publication: 2022 Feb 03.
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9
Akademický článek
Polymicrobial infections can select against Pseudomonas aeruginosa mutators because of quorum-sensing trade-offs.
Autor: Luján AM; ESI and CEC, Biosciences, University of Exeter, Penryn, UK. adem.lujan@gmail.com.; Departamento de Química Biológica Ranwel Caputto, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Córdoba, Argentina. adem.lujan@gmail.com.; Centro de Investigaciones en Química Biológica de Córdoba, CONICET, Córdoba, Argentina. adem.lujan@gmail.com.; Instituto de Investigaciones en Recursos Naturales y Sustentabilidad Jose Sanchez Labrador S.J., IRNASUS-CONICET, Córdoba, Argentina. adem.lujan@gmail.com., Paterson S; Institute of Integrative Biology, University of Liverpool, Liverpool, UK., Hesse E; ESI and CEC, Biosciences, University of Exeter, Penryn, UK., Sommer LM; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark., Marvig RL; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark.; Center for Genomic Medicine, Rigshopitalet, Copenhagen, Denmark., Sharma MD; ESI and CEC, Biosciences, University of Exeter, Penryn, UK., Alseth EO; ESI and CEC, Biosciences, University of Exeter, Penryn, UK., Ciofu O; Costerton Biofilm Center, Department for Immunology and Microbiology, University of Copenhagen, Copenhagen, Denmark., Smania AM; Departamento de Química Biológica Ranwel Caputto, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Córdoba, Argentina.; Centro de Investigaciones en Química Biológica de Córdoba, CONICET, Córdoba, Argentina., Molin S; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark., Johansen HK; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark.; Department of Clinical Microbiology, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark.; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Buckling A; ESI and CEC, Biosciences, University of Exeter, Penryn, UK.
Publikováno v: Nature ecology & evolution [Nat Ecol Evol] 2022 Jul; Vol. 6 (7), pp. 979-988. Date of Electronic Publication: 2022 May 26.
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10
Akademický článek
Added Value of Reanalysis of Whole Exome- and Whole Genome Sequencing Data From Patients Suspected of Primary Immune Deficiency Using an Extended Gene Panel and Structural Variation Calling.
Autor: Mørup SB; Centre of Excellence for Health, Immunity, and Infections, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Nazaryan-Petersen L; Center for Genomic Medicine, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Gabrielaite M; Center for Genomic Medicine, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Reekie J; Centre of Excellence for Health, Immunity, and Infections, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Marquart HV; Department of Clinical Immunology, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Hartling HJ; Department of Clinical Immunology, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Marvig RL; Center for Genomic Medicine, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Katzenstein TL; Department of Infectious Diseases, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Masmas TN; The Child and Adolescent Department, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Lundgren J; Centre of Excellence for Health, Immunity, and Infections, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark.; Department of Infectious Diseases, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Murray DD; Centre of Excellence for Health, Immunity, and Infections, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Helleberg M; Centre of Excellence for Health, Immunity, and Infections, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark.; Department of Infectious Diseases, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Borgwardt L; Center for Genomic Medicine, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark.
Publikováno v: Frontiers in immunology [Front Immunol] 2022 Jun 30; Vol. 13, pp. 906328. Date of Electronic Publication: 2022 Jun 30 (Print Publication: 2022).
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